Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yciQ and rluB are separated by 212 nucleotides rluB and cobO are separated by 39 nucleotides cobO and yciK overlap by 4 nucleotides
MCAODC_15630: yciQ - Uncharacterized protein YciQ, at 15,753 to 17,336
yciQ
MCAODC_15635: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 17,549 to 18,421
rluB
MCAODC_15640: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 18,461 to 19,051
cobO
MCAODC_15645: yciK - YciK family oxidoreductase, at 19,048 to 19,806
yciK
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 16.576 kb on + strand, within yciQ at 16.771 kb on + strand, within yciQ at 16.890 kb on - strand, within yciQ at 16.920 kb on + strand, within yciQ at 16.920 kb on + strand, within yciQ at 16.923 kb on - strand, within yciQ at 16.980 kb on + strand, within yciQ at 17.040 kb on - strand, within yciQ at 17.040 kb on - strand, within yciQ at 17.129 kb on - strand, within yciQ at 17.377 kb on + strand at 17.378 kb on - strand at 17.382 kb on + strand at 17.382 kb on + strand at 17.382 kb on + strand at 17.383 kb on - strand at 17.383 kb on - strand at 17.383 kb on - strand at 17.383 kb on - strand at 17.385 kb on + strand at 17.386 kb on - strand at 17.412 kb on + strand at 17.433 kb on + strand at 17.460 kb on + strand at 17.463 kb on + strand at 17.480 kb on + strand at 17.549 kb on - strand at 17.549 kb on - strand at 17.617 kb on + strand at 17.765 kb on + strand, within rluB at 17.765 kb on + strand, within rluB at 17.765 kb on + strand, within rluB at 17.966 kb on + strand, within rluB at 17.979 kb on + strand, within rluB at 17.979 kb on - strand, within rluB at 18.055 kb on + strand, within rluB at 18.098 kb on + strand, within rluB at 18.168 kb on + strand, within rluB at 18.264 kb on - strand, within rluB at 18.409 kb on + strand at 18.412 kb on + strand at 18.429 kb on - strand at 18.456 kb on - strand at 18.463 kb on - strand at 18.552 kb on - strand, within cobO at 18.552 kb on - strand, within cobO at 18.552 kb on - strand, within cobO at 18.612 kb on - strand, within cobO at 18.649 kb on - strand, within cobO at 18.658 kb on + strand, within cobO at 18.659 kb on - strand, within cobO at 18.660 kb on + strand, within cobO at 18.660 kb on + strand, within cobO at 18.661 kb on - strand, within cobO at 18.661 kb on - strand, within cobO at 18.779 kb on - strand, within cobO at 18.860 kb on - strand, within cobO at 19.136 kb on + strand, within yciK at 19.314 kb on - strand, within yciK at 19.314 kb on - strand, within yciK at 19.314 kb on - strand, within yciK at 19.391 kb on - strand, within yciK at 19.394 kb on - strand, within yciK at 19.402 kb on + strand, within yciK at 19.420 kb on - strand, within yciK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 16,576 + yciQ MCAODC_15630 0.52 -0.9 16,771 + yciQ MCAODC_15630 0.64 +0.5 16,890 - yciQ MCAODC_15630 0.72 -0.6 16,920 + yciQ MCAODC_15630 0.74 -0.0 16,920 + yciQ MCAODC_15630 0.74 +0.5 16,923 - yciQ MCAODC_15630 0.74 +1.2 16,980 + yciQ MCAODC_15630 0.77 +0.4 17,040 - yciQ MCAODC_15630 0.81 +0.0 17,040 - yciQ MCAODC_15630 0.81 +0.9 17,129 - yciQ MCAODC_15630 0.87 -1.5 17,377 + -0.4 17,378 - +1.8 17,382 + -0.1 17,382 + -0.5 17,382 + +0.8 17,383 - -0.2 17,383 - -1.5 17,383 - +0.2 17,383 - -0.2 17,385 + -0.3 17,386 - +1.0 17,412 + +0.8 17,433 + -1.5 17,460 + -0.5 17,463 + +0.1 17,480 + +1.3 17,549 - +1.9 17,549 - +1.5 17,617 + -0.0 17,765 + rluB MCAODC_15635 0.25 -1.7 17,765 + rluB MCAODC_15635 0.25 +1.1 17,765 + rluB MCAODC_15635 0.25 +1.1 17,966 + rluB MCAODC_15635 0.48 -1.1 17,979 + rluB MCAODC_15635 0.49 -1.8 17,979 - rluB MCAODC_15635 0.49 -1.0 18,055 + rluB MCAODC_15635 0.58 +0.2 18,098 + rluB MCAODC_15635 0.63 -3.0 18,168 + rluB MCAODC_15635 0.71 -2.0 18,264 - rluB MCAODC_15635 0.82 +1.8 18,409 + +0.9 18,412 + +1.1 18,429 - +1.3 18,456 - -1.0 18,463 - +1.1 18,552 - cobO MCAODC_15640 0.15 -1.6 18,552 - cobO MCAODC_15640 0.15 +1.0 18,552 - cobO MCAODC_15640 0.15 -0.6 18,612 - cobO MCAODC_15640 0.26 +4.1 18,649 - cobO MCAODC_15640 0.32 +0.9 18,658 + cobO MCAODC_15640 0.33 +0.4 18,659 - cobO MCAODC_15640 0.34 +0.7 18,660 + cobO MCAODC_15640 0.34 +0.7 18,660 + cobO MCAODC_15640 0.34 +0.8 18,661 - cobO MCAODC_15640 0.34 +0.3 18,661 - cobO MCAODC_15640 0.34 -0.4 18,779 - cobO MCAODC_15640 0.54 -1.5 18,860 - cobO MCAODC_15640 0.68 -0.6 19,136 + yciK MCAODC_15645 0.12 -0.5 19,314 - yciK MCAODC_15645 0.35 -0.7 19,314 - yciK MCAODC_15645 0.35 +0.0 19,314 - yciK MCAODC_15645 0.35 +1.1 19,391 - yciK MCAODC_15645 0.45 +0.8 19,394 - yciK MCAODC_15645 0.46 -1.1 19,402 + yciK MCAODC_15645 0.47 -0.3 19,420 - yciK MCAODC_15645 0.49 -1.5
Or see this region's nucleotide sequence