Strain Fitness in Escherichia coli ECRC101 around MCAODC_13410

Experiment: WM_EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_13395 and MCAODC_13400 are separated by 273 nucleotidesMCAODC_13400 and MCAODC_13405 are separated by 14 nucleotidesMCAODC_13405 and MCAODC_13410 are separated by 7 nucleotidesMCAODC_13410 and bor are separated by 31 nucleotidesbor and MCAODC_13420 are separated by 149 nucleotidesMCAODC_13420 and MCAODC_13425 are separated by 55 nucleotides MCAODC_13395: MCAODC_13395 - SAR-endolysin, at 2,621,423 to 2,621,956 _13395 MCAODC_13400: MCAODC_13400 - hypothetical protein, at 2,622,230 to 2,622,799 _13400 MCAODC_13405: MCAODC_13405 - hypothetical protein, at 2,622,814 to 2,622,948 _13405 MCAODC_13410: MCAODC_13410 - lysis protein, at 2,622,956 to 2,623,420 _13410 MCAODC_13415: bor - serum resistance lipoprotein Bor, at 2,623,452 to 2,623,745 bor MCAODC_13420: MCAODC_13420 - hypothetical protein, at 2,623,895 to 2,624,098 _13420 MCAODC_13425: MCAODC_13425 - terminase, at 2,624,154 to 2,624,960 _13425 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -3 -2 -1 0 1at 2622.112 kb on - strandat 2622.189 kb on + strandat 2622.236 kb on - strandat 2622.236 kb on - strandat 2622.269 kb on + strandat 2622.269 kb on + strandat 2622.270 kb on - strandat 2622.270 kb on - strandat 2622.427 kb on + strand, within MCAODC_13400at 2622.489 kb on + strand, within MCAODC_13400at 2622.489 kb on + strand, within MCAODC_13400at 2622.490 kb on - strand, within MCAODC_13400at 2622.549 kb on - strand, within MCAODC_13400at 2622.691 kb on + strand, within MCAODC_13400at 2622.705 kb on + strand, within MCAODC_13400at 2622.783 kb on + strandat 2622.834 kb on - strand, within MCAODC_13405at 2622.857 kb on + strand, within MCAODC_13405at 2623.052 kb on + strand, within MCAODC_13410at 2623.052 kb on + strand, within MCAODC_13410at 2623.114 kb on + strand, within MCAODC_13410at 2623.114 kb on + strand, within MCAODC_13410at 2623.295 kb on - strand, within MCAODC_13410at 2623.397 kb on + strandat 2623.397 kb on + strandat 2623.399 kb on + strandat 2623.418 kb on + strandat 2623.453 kb on + strandat 2623.453 kb on + strandat 2623.454 kb on - strandat 2623.454 kb on - strandat 2623.466 kb on - strandat 2623.466 kb on - strandat 2623.466 kb on - strandat 2623.488 kb on - strand, within borat 2623.490 kb on - strand, within borat 2623.490 kb on - strand, within borat 2623.490 kb on - strand, within borat 2623.653 kb on + strand, within borat 2623.680 kb on - strand, within borat 2623.680 kb on - strand, within borat 2623.751 kb on + strandat 2623.785 kb on - strandat 2623.852 kb on + strandat 2623.879 kb on + strandat 2623.879 kb on + strandat 2623.880 kb on - strandat 2623.880 kb on - strandat 2623.880 kb on - strandat 2623.890 kb on + strandat 2623.890 kb on + strandat 2623.890 kb on + strandat 2623.894 kb on + strandat 2623.894 kb on + strandat 2623.894 kb on + strandat 2623.894 kb on + strandat 2623.894 kb on + strandat 2623.895 kb on - strandat 2624.074 kb on + strand, within MCAODC_13420at 2624.116 kb on + strandat 2624.117 kb on - strandat 2624.117 kb on - strandat 2624.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV219
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2,622,112 - +0.9
2,622,189 + +0.2
2,622,236 - -0.3
2,622,236 - +0.0
2,622,269 + -2.9
2,622,269 + +0.2
2,622,270 - +0.0
2,622,270 - -0.8
2,622,427 + MCAODC_13400 0.35 +1.7
2,622,489 + MCAODC_13400 0.45 -0.6
2,622,489 + MCAODC_13400 0.45 +0.2
2,622,490 - MCAODC_13400 0.46 -1.2
2,622,549 - MCAODC_13400 0.56 -1.1
2,622,691 + MCAODC_13400 0.81 -1.0
2,622,705 + MCAODC_13400 0.83 +0.1
2,622,783 + -0.1
2,622,834 - MCAODC_13405 0.15 -1.0
2,622,857 + MCAODC_13405 0.32 -0.4
2,623,052 + MCAODC_13410 0.21 -1.6
2,623,052 + MCAODC_13410 0.21 -1.3
2,623,114 + MCAODC_13410 0.34 -1.2
2,623,114 + MCAODC_13410 0.34 -0.8
2,623,295 - MCAODC_13410 0.73 -2.4
2,623,397 + -0.9
2,623,397 + -1.0
2,623,399 + -0.0
2,623,418 + -1.1
2,623,453 + +0.6
2,623,453 + -1.5
2,623,454 - -0.0
2,623,454 - -1.8
2,623,466 - -0.3
2,623,466 - -1.4
2,623,466 - -0.5
2,623,488 - bor MCAODC_13415 0.12 -1.5
2,623,490 - bor MCAODC_13415 0.13 +0.4
2,623,490 - bor MCAODC_13415 0.13 -0.3
2,623,490 - bor MCAODC_13415 0.13 -0.2
2,623,653 + bor MCAODC_13415 0.68 +0.1
2,623,680 - bor MCAODC_13415 0.78 +0.1
2,623,680 - bor MCAODC_13415 0.78 -0.4
2,623,751 + -0.8
2,623,785 - -0.4
2,623,852 + +0.7
2,623,879 + +1.4
2,623,879 + -0.1
2,623,880 - -2.8
2,623,880 - -0.4
2,623,880 - -0.2
2,623,890 + -0.2
2,623,890 + -1.4
2,623,890 + -3.1
2,623,894 + -1.3
2,623,894 + +0.3
2,623,894 + -0.8
2,623,894 + -1.0
2,623,894 + -0.7
2,623,895 - -0.5
2,624,074 + MCAODC_13420 0.88 -0.2
2,624,116 + +0.4
2,624,117 - -0.8
2,624,117 - -0.3
2,624,224 + -0.7

Or see this region's nucleotide sequence