Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_13395 and MCAODC_13400 are separated by 273 nucleotides MCAODC_13400 and MCAODC_13405 are separated by 14 nucleotides MCAODC_13405 and MCAODC_13410 are separated by 7 nucleotides MCAODC_13410 and bor are separated by 31 nucleotides bor and MCAODC_13420 are separated by 149 nucleotides MCAODC_13420 and MCAODC_13425 are separated by 55 nucleotides
MCAODC_13395: MCAODC_13395 - SAR-endolysin, at 2,621,423 to 2,621,956
_13395
MCAODC_13400: MCAODC_13400 - hypothetical protein, at 2,622,230 to 2,622,799
_13400
MCAODC_13405: MCAODC_13405 - hypothetical protein, at 2,622,814 to 2,622,948
_13405
MCAODC_13410: MCAODC_13410 - lysis protein, at 2,622,956 to 2,623,420
_13410
MCAODC_13415: bor - serum resistance lipoprotein Bor, at 2,623,452 to 2,623,745
bor
MCAODC_13420: MCAODC_13420 - hypothetical protein, at 2,623,895 to 2,624,098
_13420
MCAODC_13425: MCAODC_13425 - terminase, at 2,624,154 to 2,624,960
_13425
Position (kb)
2622
2623
2624 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2622.112 kb on - strand at 2622.189 kb on + strand at 2622.236 kb on - strand at 2622.236 kb on - strand at 2622.269 kb on + strand at 2622.269 kb on + strand at 2622.270 kb on - strand at 2622.270 kb on - strand at 2622.427 kb on + strand, within MCAODC_13400 at 2622.489 kb on + strand, within MCAODC_13400 at 2622.489 kb on + strand, within MCAODC_13400 at 2622.490 kb on - strand, within MCAODC_13400 at 2622.549 kb on - strand, within MCAODC_13400 at 2622.691 kb on + strand, within MCAODC_13400 at 2622.705 kb on + strand, within MCAODC_13400 at 2622.783 kb on + strand at 2622.834 kb on - strand, within MCAODC_13405 at 2622.857 kb on + strand, within MCAODC_13405 at 2623.052 kb on + strand, within MCAODC_13410 at 2623.052 kb on + strand, within MCAODC_13410 at 2623.114 kb on + strand, within MCAODC_13410 at 2623.114 kb on + strand, within MCAODC_13410 at 2623.295 kb on - strand, within MCAODC_13410 at 2623.397 kb on + strand at 2623.397 kb on + strand at 2623.399 kb on + strand at 2623.418 kb on + strand at 2623.453 kb on + strand at 2623.453 kb on + strand at 2623.454 kb on - strand at 2623.454 kb on - strand at 2623.466 kb on - strand at 2623.466 kb on - strand at 2623.466 kb on - strand at 2623.488 kb on - strand, within bor at 2623.490 kb on - strand, within bor at 2623.490 kb on - strand, within bor at 2623.490 kb on - strand, within bor at 2623.653 kb on + strand, within bor at 2623.680 kb on - strand, within bor at 2623.680 kb on - strand, within bor at 2623.751 kb on + strand at 2623.785 kb on - strand at 2623.852 kb on + strand at 2623.879 kb on + strand at 2623.879 kb on + strand at 2623.880 kb on - strand at 2623.880 kb on - strand at 2623.880 kb on - strand at 2623.890 kb on + strand at 2623.890 kb on + strand at 2623.890 kb on + strand at 2623.894 kb on + strand at 2623.894 kb on + strand at 2623.894 kb on + strand at 2623.894 kb on + strand at 2623.894 kb on + strand at 2623.895 kb on - strand at 2624.074 kb on + strand, within MCAODC_13420 at 2624.116 kb on + strand at 2624.117 kb on - strand at 2624.117 kb on - strand at 2624.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 2,622,112 - +0.9 2,622,189 + +0.2 2,622,236 - -0.3 2,622,236 - +0.0 2,622,269 + -2.9 2,622,269 + +0.2 2,622,270 - +0.0 2,622,270 - -0.8 2,622,427 + MCAODC_13400 0.35 +1.7 2,622,489 + MCAODC_13400 0.45 -0.6 2,622,489 + MCAODC_13400 0.45 +0.2 2,622,490 - MCAODC_13400 0.46 -1.2 2,622,549 - MCAODC_13400 0.56 -1.1 2,622,691 + MCAODC_13400 0.81 -1.0 2,622,705 + MCAODC_13400 0.83 +0.1 2,622,783 + -0.1 2,622,834 - MCAODC_13405 0.15 -1.0 2,622,857 + MCAODC_13405 0.32 -0.4 2,623,052 + MCAODC_13410 0.21 -1.6 2,623,052 + MCAODC_13410 0.21 -1.3 2,623,114 + MCAODC_13410 0.34 -1.2 2,623,114 + MCAODC_13410 0.34 -0.8 2,623,295 - MCAODC_13410 0.73 -2.4 2,623,397 + -0.9 2,623,397 + -1.0 2,623,399 + -0.0 2,623,418 + -1.1 2,623,453 + +0.6 2,623,453 + -1.5 2,623,454 - -0.0 2,623,454 - -1.8 2,623,466 - -0.3 2,623,466 - -1.4 2,623,466 - -0.5 2,623,488 - bor MCAODC_13415 0.12 -1.5 2,623,490 - bor MCAODC_13415 0.13 +0.4 2,623,490 - bor MCAODC_13415 0.13 -0.3 2,623,490 - bor MCAODC_13415 0.13 -0.2 2,623,653 + bor MCAODC_13415 0.68 +0.1 2,623,680 - bor MCAODC_13415 0.78 +0.1 2,623,680 - bor MCAODC_13415 0.78 -0.4 2,623,751 + -0.8 2,623,785 - -0.4 2,623,852 + +0.7 2,623,879 + +1.4 2,623,879 + -0.1 2,623,880 - -2.8 2,623,880 - -0.4 2,623,880 - -0.2 2,623,890 + -0.2 2,623,890 + -1.4 2,623,890 + -3.1 2,623,894 + -1.3 2,623,894 + +0.3 2,623,894 + -0.8 2,623,894 + -1.0 2,623,894 + -0.7 2,623,895 - -0.5 2,624,074 + MCAODC_13420 0.88 -0.2 2,624,116 + +0.4 2,624,117 - -0.8 2,624,117 - -0.3 2,624,224 + -0.7
Or see this region's nucleotide sequence