Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapA and bamC are separated by 16 nucleotides bamC and MCAODC_12455 overlap by 90 nucleotides MCAODC_12455 and purC are separated by 71 nucleotides purC and ypfJ are separated by 167 nucleotides
MCAODC_12445: dapA - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,469,110 to 2,469,988
dapA
MCAODC_12450: bamC - outer membrane protein assembly factor BamC, at 2,470,005 to 2,471,039
bamC
MCAODC_12455: MCAODC_12455 - hypothetical protein, at 2,470,950 to 2,471,180
_12455
MCAODC_12460: purC - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,471,252 to 2,471,965
purC
MCAODC_12465: ypfJ - Uncharacterized protein YpfJ, at 2,472,133 to 2,472,996
ypfJ
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2470.011 kb on + strand at 2470.011 kb on + strand at 2470.011 kb on + strand at 2470.011 kb on + strand at 2470.022 kb on + strand at 2470.022 kb on + strand at 2470.023 kb on - strand at 2470.023 kb on - strand at 2470.023 kb on - strand at 2470.063 kb on + strand at 2470.079 kb on + strand at 2470.079 kb on + strand at 2470.095 kb on + strand at 2470.096 kb on - strand at 2470.097 kb on + strand at 2470.098 kb on - strand at 2470.125 kb on + strand, within bamC at 2470.197 kb on + strand, within bamC at 2470.197 kb on + strand, within bamC at 2470.389 kb on + strand, within bamC at 2470.389 kb on + strand, within bamC at 2470.390 kb on - strand, within bamC at 2470.441 kb on + strand, within bamC at 2470.474 kb on - strand, within bamC at 2470.499 kb on + strand, within bamC at 2470.617 kb on - strand, within bamC at 2470.686 kb on - strand, within bamC at 2470.693 kb on + strand, within bamC at 2470.720 kb on + strand, within bamC at 2470.842 kb on + strand, within bamC at 2470.844 kb on + strand, within bamC at 2470.845 kb on - strand, within bamC at 2470.911 kb on + strand, within bamC at 2470.911 kb on + strand, within bamC at 2470.912 kb on - strand, within bamC at 2470.913 kb on + strand, within bamC at 2470.914 kb on - strand, within bamC at 2470.933 kb on + strand, within bamC at 2470.933 kb on + strand, within bamC at 2470.952 kb on - strand at 2470.976 kb on + strand at 2471.008 kb on + strand at 2471.009 kb on - strand at 2471.037 kb on + strand at 2471.038 kb on - strand at 2471.118 kb on + strand, within MCAODC_12455 at 2471.273 kb on + strand at 2471.273 kb on + strand at 2471.274 kb on - strand at 2471.274 kb on - strand at 2471.295 kb on + strand at 2471.297 kb on + strand at 2471.297 kb on + strand at 2471.298 kb on - strand at 2471.344 kb on + strand, within purC at 2471.345 kb on - strand, within purC at 2471.345 kb on - strand, within purC at 2471.345 kb on - strand, within purC at 2471.392 kb on + strand, within purC at 2471.393 kb on - strand, within purC at 2471.393 kb on - strand, within purC at 2471.414 kb on + strand, within purC at 2471.415 kb on - strand, within purC at 2471.415 kb on - strand, within purC at 2471.422 kb on + strand, within purC at 2471.581 kb on + strand, within purC at 2471.718 kb on - strand, within purC at 2471.798 kb on + strand, within purC at 2471.799 kb on - strand, within purC at 2471.952 kb on + strand at 2471.952 kb on + strand at 2471.952 kb on + strand at 2471.952 kb on + strand at 2472.021 kb on - strand at 2472.074 kb on + strand at 2472.094 kb on + strand at 2472.095 kb on - strand at 2472.106 kb on + strand at 2472.107 kb on - strand at 2472.107 kb on - strand at 2472.115 kb on + strand at 2472.116 kb on - strand at 2472.117 kb on + strand at 2472.117 kb on + strand at 2472.128 kb on + strand at 2472.128 kb on + strand at 2472.129 kb on - strand at 2472.129 kb on - strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.132 kb on + strand at 2472.133 kb on - strand at 2472.133 kb on - strand at 2472.133 kb on - strand at 2472.133 kb on - strand at 2472.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 2,470,011 + -0.3 2,470,011 + -2.3 2,470,011 + +1.2 2,470,011 + -1.0 2,470,022 + -1.0 2,470,022 + +0.3 2,470,023 - +0.8 2,470,023 - +0.1 2,470,023 - -0.9 2,470,063 + +0.4 2,470,079 + +0.7 2,470,079 + +0.5 2,470,095 + +0.3 2,470,096 - +2.3 2,470,097 + +0.0 2,470,098 - +1.2 2,470,125 + bamC MCAODC_12450 0.12 +1.1 2,470,197 + bamC MCAODC_12450 0.19 +0.7 2,470,197 + bamC MCAODC_12450 0.19 +0.2 2,470,389 + bamC MCAODC_12450 0.37 +1.0 2,470,389 + bamC MCAODC_12450 0.37 -0.1 2,470,390 - bamC MCAODC_12450 0.37 -1.4 2,470,441 + bamC MCAODC_12450 0.42 +0.2 2,470,474 - bamC MCAODC_12450 0.45 +0.3 2,470,499 + bamC MCAODC_12450 0.48 +0.5 2,470,617 - bamC MCAODC_12450 0.59 +1.5 2,470,686 - bamC MCAODC_12450 0.66 -0.5 2,470,693 + bamC MCAODC_12450 0.66 -0.1 2,470,720 + bamC MCAODC_12450 0.69 +0.0 2,470,842 + bamC MCAODC_12450 0.81 +0.3 2,470,844 + bamC MCAODC_12450 0.81 +0.4 2,470,845 - bamC MCAODC_12450 0.81 +1.0 2,470,911 + bamC MCAODC_12450 0.88 +0.2 2,470,911 + bamC MCAODC_12450 0.88 -2.3 2,470,912 - bamC MCAODC_12450 0.88 +0.9 2,470,913 + bamC MCAODC_12450 0.88 -0.8 2,470,914 - bamC MCAODC_12450 0.88 +0.9 2,470,933 + bamC MCAODC_12450 0.90 +0.2 2,470,933 + bamC MCAODC_12450 0.90 +0.3 2,470,952 - +0.2 2,470,976 + -0.0 2,471,008 + +0.4 2,471,009 - +0.1 2,471,037 + +1.3 2,471,038 - +0.5 2,471,118 + MCAODC_12455 0.73 -0.9 2,471,273 + -2.8 2,471,273 + +0.5 2,471,274 - -2.2 2,471,274 - -1.4 2,471,295 + -0.9 2,471,297 + -1.0 2,471,297 + -3.4 2,471,298 - -3.0 2,471,344 + purC MCAODC_12460 0.13 -0.6 2,471,345 - purC MCAODC_12460 0.13 -1.5 2,471,345 - purC MCAODC_12460 0.13 -1.9 2,471,345 - purC MCAODC_12460 0.13 -3.7 2,471,392 + purC MCAODC_12460 0.20 -3.9 2,471,393 - purC MCAODC_12460 0.20 -0.4 2,471,393 - purC MCAODC_12460 0.20 -0.7 2,471,414 + purC MCAODC_12460 0.23 -2.1 2,471,415 - purC MCAODC_12460 0.23 +1.2 2,471,415 - purC MCAODC_12460 0.23 -0.6 2,471,422 + purC MCAODC_12460 0.24 -0.9 2,471,581 + purC MCAODC_12460 0.46 -4.0 2,471,718 - purC MCAODC_12460 0.65 -2.0 2,471,798 + purC MCAODC_12460 0.76 -3.6 2,471,799 - purC MCAODC_12460 0.77 +0.3 2,471,952 + -0.7 2,471,952 + -0.9 2,471,952 + -0.6 2,471,952 + -0.6 2,472,021 - -1.8 2,472,074 + +0.4 2,472,094 + +0.0 2,472,095 - -0.9 2,472,106 + +0.8 2,472,107 - +0.2 2,472,107 - -0.4 2,472,115 + -2.2 2,472,116 - +0.2 2,472,117 + -0.7 2,472,117 + +0.2 2,472,128 + -0.7 2,472,128 + +0.3 2,472,129 - -0.3 2,472,129 - -2.5 2,472,132 + +0.2 2,472,132 + -0.7 2,472,132 + -0.3 2,472,132 + -1.2 2,472,132 + -0.5 2,472,132 + +0.0 2,472,132 + -0.4 2,472,132 + +0.5 2,472,133 - +0.6 2,472,133 - +0.2 2,472,133 - -0.1 2,472,133 - +2.1 2,472,133 - -0.7
Or see this region's nucleotide sequence