Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ytfT and MCAODC_02465 are separated by 13 nucleotides MCAODC_02465 and MCAODC_02470 are separated by 138 nucleotides MCAODC_02470 and MCAODC_02475 are separated by 24 nucleotides
MCAODC_02460: ytfT - Galactofuranose transporter permease protein YtfT, at 505,006 to 506,028
ytfT
MCAODC_02465: MCAODC_02465 - Ribose import ATP-binding protein RbsA, at 506,042 to 506,314
_02465
MCAODC_02470: MCAODC_02470 - Sugar transport system ATP-binding protein, at 506,453 to 506,827
_02470
MCAODC_02475: MCAODC_02475 - ABC transporter ATP-binding protein, at 506,852 to 507,544
_02475
Position (kb) 506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 505.048 kb on - strand at 505.158 kb on + strand, within ytfT at 505.158 kb on + strand, within ytfT at 505.159 kb on - strand, within ytfT at 505.186 kb on + strand, within ytfT at 505.191 kb on + strand, within ytfT at 505.191 kb on + strand, within ytfT at 505.191 kb on + strand, within ytfT at 505.192 kb on - strand, within ytfT at 505.258 kb on + strand, within ytfT at 505.344 kb on - strand, within ytfT at 505.344 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.651 kb on + strand, within ytfT at 505.651 kb on + strand, within ytfT at 505.652 kb on - strand, within ytfT at 505.696 kb on + strand, within ytfT at 505.816 kb on - strand, within ytfT at 505.816 kb on - strand, within ytfT at 506.043 kb on + strand at 506.044 kb on - strand at 506.142 kb on + strand, within MCAODC_02465 at 506.142 kb on + strand, within MCAODC_02465 at 506.202 kb on - strand, within MCAODC_02465 at 506.295 kb on - strand at 506.435 kb on + strand at 506.436 kb on - strand at 506.436 kb on - strand at 506.454 kb on + strand at 506.455 kb on - strand at 506.647 kb on + strand, within MCAODC_02470 at 506.696 kb on + strand, within MCAODC_02470 at 506.696 kb on + strand, within MCAODC_02470 at 506.697 kb on - strand, within MCAODC_02470 at 506.849 kb on + strand at 506.873 kb on + strand at 506.874 kb on - strand at 506.919 kb on + strand at 506.920 kb on - strand at 506.996 kb on + strand, within MCAODC_02475 at 506.997 kb on - strand, within MCAODC_02475 at 506.997 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.194 kb on + strand, within MCAODC_02475 at 507.195 kb on - strand, within MCAODC_02475 at 507.227 kb on - strand, within MCAODC_02475 at 507.227 kb on - strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.231 kb on - strand, within MCAODC_02475 at 507.231 kb on - strand, within MCAODC_02475 at 507.231 kb on - strand, within MCAODC_02475 at 507.236 kb on - strand, within MCAODC_02475 at 507.250 kb on + strand, within MCAODC_02475 at 507.250 kb on + strand, within MCAODC_02475 at 507.251 kb on - strand, within MCAODC_02475
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 505,048 - +1.8 505,158 + ytfT MCAODC_02460 0.15 +0.4 505,158 + ytfT MCAODC_02460 0.15 -0.1 505,159 - ytfT MCAODC_02460 0.15 -2.4 505,186 + ytfT MCAODC_02460 0.18 +1.4 505,191 + ytfT MCAODC_02460 0.18 +0.8 505,191 + ytfT MCAODC_02460 0.18 -0.1 505,191 + ytfT MCAODC_02460 0.18 -2.8 505,192 - ytfT MCAODC_02460 0.18 -0.3 505,258 + ytfT MCAODC_02460 0.25 +0.5 505,344 - ytfT MCAODC_02460 0.33 -0.0 505,344 - ytfT MCAODC_02460 0.33 +0.5 505,348 - ytfT MCAODC_02460 0.33 -0.3 505,348 - ytfT MCAODC_02460 0.33 -0.9 505,348 - ytfT MCAODC_02460 0.33 +2.1 505,348 - ytfT MCAODC_02460 0.33 +1.3 505,651 + ytfT MCAODC_02460 0.63 +0.1 505,651 + ytfT MCAODC_02460 0.63 +0.5 505,652 - ytfT MCAODC_02460 0.63 -0.3 505,696 + ytfT MCAODC_02460 0.67 -2.7 505,816 - ytfT MCAODC_02460 0.79 +0.7 505,816 - ytfT MCAODC_02460 0.79 -0.8 506,043 + +0.8 506,044 - -0.1 506,142 + MCAODC_02465 0.37 -2.7 506,142 + MCAODC_02465 0.37 -0.6 506,202 - MCAODC_02465 0.59 -0.3 506,295 - +0.2 506,435 + +0.5 506,436 - -0.8 506,436 - +0.4 506,454 + +0.8 506,455 - -2.2 506,647 + MCAODC_02470 0.52 +0.5 506,696 + MCAODC_02470 0.65 +1.1 506,696 + MCAODC_02470 0.65 -0.6 506,697 - MCAODC_02470 0.65 -0.3 506,849 + +0.3 506,873 + -0.6 506,874 - +0.2 506,919 + -1.2 506,920 - -0.7 506,996 + MCAODC_02475 0.21 +1.5 506,997 - MCAODC_02475 0.21 -0.9 506,997 - MCAODC_02475 0.21 +2.0 507,148 - MCAODC_02475 0.43 -1.1 507,148 - MCAODC_02475 0.43 -0.5 507,148 - MCAODC_02475 0.43 -1.5 507,148 - MCAODC_02475 0.43 -0.3 507,194 + MCAODC_02475 0.49 +1.3 507,195 - MCAODC_02475 0.49 -0.3 507,227 - MCAODC_02475 0.54 +0.3 507,227 - MCAODC_02475 0.54 -2.8 507,230 + MCAODC_02475 0.55 -0.8 507,230 + MCAODC_02475 0.55 +0.3 507,230 + MCAODC_02475 0.55 +1.0 507,230 + MCAODC_02475 0.55 -0.2 507,231 - MCAODC_02475 0.55 -0.0 507,231 - MCAODC_02475 0.55 +0.2 507,231 - MCAODC_02475 0.55 -0.8 507,236 - MCAODC_02475 0.55 +1.0 507,250 + MCAODC_02475 0.57 +0.4 507,250 + MCAODC_02475 0.57 +0.7 507,251 - MCAODC_02475 0.58 +1.9
Or see this region's nucleotide sequence