Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hcp and MCAODC_00450 are separated by 20 nucleotides MCAODC_00450 and MCAODC_00455 are separated by 109 nucleotides MCAODC_00455 and MCAODC_00460 are separated by 2 nucleotides MCAODC_00460 and MCAODC_00465 overlap by 4 nucleotides MCAODC_00465 and MCAODC_00470 are separated by 184 nucleotides
MCAODC_00445: hcp - type VI secretion system tube protein Hcp, at 73,195 to 73,674
hcp
MCAODC_00450: MCAODC_00450 - hypothetical protein, at 73,695 to 73,886
_00450
MCAODC_00455: MCAODC_00455 - Peptidoglycan-binding protein LysM, at 73,996 to 74,592
_00455
MCAODC_00460: MCAODC_00460 - hypothetical protein, at 74,595 to 75,044
_00460
MCAODC_00465: MCAODC_00465 - hypothetical protein, at 75,041 to 75,337
_00465
MCAODC_00470: MCAODC_00470 - Uncharacterized lipoprotein YafT, at 75,522 to 76,322
_00470
Position (kb) 74
75
76 Strain fitness (log2 ratio) -1
0
1
2 at 73.614 kb on - strand, within hcp at 73.982 kb on - strand at 73.985 kb on + strand at 74.306 kb on + strand, within MCAODC_00455 at 74.307 kb on - strand, within MCAODC_00455 at 74.469 kb on + strand, within MCAODC_00455 at 74.512 kb on + strand, within MCAODC_00455 at 74.563 kb on - strand at 74.637 kb on - strand at 74.679 kb on - strand, within MCAODC_00460 at 74.742 kb on - strand, within MCAODC_00460 at 74.875 kb on - strand, within MCAODC_00460 at 74.944 kb on + strand, within MCAODC_00460 at 74.955 kb on + strand, within MCAODC_00460 at 74.956 kb on - strand, within MCAODC_00460 at 75.001 kb on - strand at 75.177 kb on + strand, within MCAODC_00465 at 75.177 kb on + strand, within MCAODC_00465 at 75.417 kb on - strand at 75.460 kb on - strand at 75.523 kb on + strand at 75.753 kb on - strand, within MCAODC_00470 at 75.776 kb on + strand, within MCAODC_00470 at 75.779 kb on - strand, within MCAODC_00470 at 75.834 kb on - strand, within MCAODC_00470 at 75.849 kb on - strand, within MCAODC_00470 at 75.906 kb on - strand, within MCAODC_00470 at 75.957 kb on - strand, within MCAODC_00470
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 73,614 - hcp MCAODC_00445 0.87 +0.1 73,982 - -1.7 73,985 + +0.9 74,306 + MCAODC_00455 0.52 +0.7 74,307 - MCAODC_00455 0.52 -0.6 74,469 + MCAODC_00455 0.79 +0.7 74,512 + MCAODC_00455 0.86 +0.1 74,563 - -1.1 74,637 - -1.1 74,679 - MCAODC_00460 0.19 -1.5 74,742 - MCAODC_00460 0.33 -0.7 74,875 - MCAODC_00460 0.62 +1.0 74,944 + MCAODC_00460 0.78 -0.1 74,955 + MCAODC_00460 0.80 -1.0 74,956 - MCAODC_00460 0.80 -1.4 75,001 - +1.9 75,177 + MCAODC_00465 0.46 +0.8 75,177 + MCAODC_00465 0.46 -0.4 75,417 - +1.0 75,460 - -1.0 75,523 + -0.2 75,753 - MCAODC_00470 0.29 -0.7 75,776 + MCAODC_00470 0.32 -0.8 75,779 - MCAODC_00470 0.32 +1.4 75,834 - MCAODC_00470 0.39 +0.2 75,849 - MCAODC_00470 0.41 +0.2 75,906 - MCAODC_00470 0.48 +0.6 75,957 - MCAODC_00470 0.54 -0.5
Or see this region's nucleotide sequence