Strain Fitness in Escherichia coli ECRC101 around MCAODC_26815

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfepD and fepG overlap by 4 nucleotidesfepG and fepC overlap by 4 nucleotidesfepC and fepE overlap by 4 nucleotides MCAODC_26805: fepD - ferrienterobactin ABC transporter permease, at 2,076,948 to 2,077,952 fepD MCAODC_26810: fepG - iron-enterobactin ABC transporter permease, at 2,077,949 to 2,078,941 fepG MCAODC_26815: fepC - ferrienterobactin ABC transporter ATPase, at 2,078,938 to 2,079,753 fepC MCAODC_26820: fepE - LPS O-antigen length regulator, at 2,079,750 to 2,080,883 fepE Position (kb) 2078 2079 2080Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2077.955 kb on + strandat 2077.972 kb on - strandat 2078.017 kb on + strandat 2078.064 kb on + strand, within fepGat 2078.098 kb on + strand, within fepGat 2078.227 kb on - strand, within fepGat 2078.237 kb on - strand, within fepGat 2078.392 kb on + strand, within fepGat 2078.393 kb on - strand, within fepGat 2078.548 kb on + strand, within fepGat 2078.548 kb on + strand, within fepGat 2078.548 kb on + strand, within fepGat 2078.548 kb on + strand, within fepGat 2078.548 kb on + strand, within fepGat 2078.549 kb on - strand, within fepGat 2078.550 kb on + strand, within fepGat 2078.550 kb on + strand, within fepGat 2078.550 kb on + strand, within fepGat 2078.559 kb on + strand, within fepGat 2078.758 kb on + strand, within fepGat 2078.849 kb on - strandat 2078.900 kb on + strandat 2078.900 kb on + strandat 2078.901 kb on - strandat 2078.906 kb on - strandat 2078.976 kb on - strandat 2078.995 kb on + strandat 2078.995 kb on + strandat 2078.995 kb on + strandat 2078.995 kb on + strandat 2078.995 kb on + strandat 2078.996 kb on - strandat 2079.051 kb on + strand, within fepCat 2079.095 kb on + strand, within fepCat 2079.222 kb on + strand, within fepCat 2079.222 kb on + strand, within fepCat 2079.223 kb on - strand, within fepCat 2079.429 kb on + strand, within fepCat 2079.430 kb on - strand, within fepCat 2079.523 kb on - strand, within fepCat 2079.549 kb on + strand, within fepCat 2079.748 kb on - strandat 2079.752 kb on - strandat 2079.756 kb on + strandat 2079.756 kb on + strandat 2079.756 kb on + strandat 2079.757 kb on - strandat 2079.810 kb on + strandat 2079.917 kb on - strand, within fepEat 2080.115 kb on - strand, within fepEat 2080.159 kb on + strand, within fepEat 2080.304 kb on - strand, within fepEat 2080.311 kb on - strand, within fepEat 2080.379 kb on - strand, within fepEat 2080.379 kb on - strand, within fepEat 2080.508 kb on - strand, within fepEat 2080.508 kb on - strand, within fepEat 2080.562 kb on + strand, within fepEat 2080.562 kb on + strand, within fepE

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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2,077,955 + -1.6
2,077,972 - -0.3
2,078,017 + +1.0
2,078,064 + fepG MCAODC_26810 0.12 -2.4
2,078,098 + fepG MCAODC_26810 0.15 -0.5
2,078,227 - fepG MCAODC_26810 0.28 -1.3
2,078,237 - fepG MCAODC_26810 0.29 -1.4
2,078,392 + fepG MCAODC_26810 0.45 -2.3
2,078,393 - fepG MCAODC_26810 0.45 -1.1
2,078,548 + fepG MCAODC_26810 0.60 +0.7
2,078,548 + fepG MCAODC_26810 0.60 -0.8
2,078,548 + fepG MCAODC_26810 0.60 -1.2
2,078,548 + fepG MCAODC_26810 0.60 -0.4
2,078,548 + fepG MCAODC_26810 0.60 -1.2
2,078,549 - fepG MCAODC_26810 0.60 +0.0
2,078,550 + fepG MCAODC_26810 0.61 +0.7
2,078,550 + fepG MCAODC_26810 0.61 -1.7
2,078,550 + fepG MCAODC_26810 0.61 -1.7
2,078,559 + fepG MCAODC_26810 0.61 -0.5
2,078,758 + fepG MCAODC_26810 0.81 -0.7
2,078,849 - +1.8
2,078,900 + +1.2
2,078,900 + -1.8
2,078,901 - -3.0
2,078,906 - -0.4
2,078,976 - +0.6
2,078,995 + -1.4
2,078,995 + -1.5
2,078,995 + -0.1
2,078,995 + +1.0
2,078,995 + -1.7
2,078,996 - -0.9
2,079,051 + fepC MCAODC_26815 0.14 -2.5
2,079,095 + fepC MCAODC_26815 0.19 -0.8
2,079,222 + fepC MCAODC_26815 0.35 -0.7
2,079,222 + fepC MCAODC_26815 0.35 -2.6
2,079,223 - fepC MCAODC_26815 0.35 -1.2
2,079,429 + fepC MCAODC_26815 0.60 -1.3
2,079,430 - fepC MCAODC_26815 0.60 -1.3
2,079,523 - fepC MCAODC_26815 0.72 +2.0
2,079,549 + fepC MCAODC_26815 0.75 +0.3
2,079,748 - +0.3
2,079,752 - +0.7
2,079,756 + -1.2
2,079,756 + -0.4
2,079,756 + +0.5
2,079,757 - +0.1
2,079,810 + +0.3
2,079,917 - fepE MCAODC_26820 0.15 -0.1
2,080,115 - fepE MCAODC_26820 0.32 -2.2
2,080,159 + fepE MCAODC_26820 0.36 +0.6
2,080,304 - fepE MCAODC_26820 0.49 -1.3
2,080,311 - fepE MCAODC_26820 0.49 +0.3
2,080,379 - fepE MCAODC_26820 0.55 +0.3
2,080,379 - fepE MCAODC_26820 0.55 +0.1
2,080,508 - fepE MCAODC_26820 0.67 +0.0
2,080,508 - fepE MCAODC_26820 0.67 -3.5
2,080,562 + fepE MCAODC_26820 0.72 +0.3
2,080,562 + fepE MCAODC_26820 0.72 +0.4

Or see this region's nucleotide sequence