Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepD and fepG overlap by 4 nucleotides fepG and fepC overlap by 4 nucleotides fepC and fepE overlap by 4 nucleotides
MCAODC_26805: fepD - ferrienterobactin ABC transporter permease, at 2,076,948 to 2,077,952
fepD
MCAODC_26810: fepG - iron-enterobactin ABC transporter permease, at 2,077,949 to 2,078,941
fepG
MCAODC_26815: fepC - ferrienterobactin ABC transporter ATPase, at 2,078,938 to 2,079,753
fepC
MCAODC_26820: fepE - LPS O-antigen length regulator, at 2,079,750 to 2,080,883
fepE
Position (kb)
2078
2079
2080 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2077.955 kb on + strand at 2077.972 kb on - strand at 2078.017 kb on + strand at 2078.064 kb on + strand, within fepG at 2078.098 kb on + strand, within fepG at 2078.227 kb on - strand, within fepG at 2078.237 kb on - strand, within fepG at 2078.392 kb on + strand, within fepG at 2078.393 kb on - strand, within fepG at 2078.548 kb on + strand, within fepG at 2078.548 kb on + strand, within fepG at 2078.548 kb on + strand, within fepG at 2078.548 kb on + strand, within fepG at 2078.548 kb on + strand, within fepG at 2078.549 kb on - strand, within fepG at 2078.550 kb on + strand, within fepG at 2078.550 kb on + strand, within fepG at 2078.550 kb on + strand, within fepG at 2078.559 kb on + strand, within fepG at 2078.758 kb on + strand, within fepG at 2078.849 kb on - strand at 2078.900 kb on + strand at 2078.900 kb on + strand at 2078.901 kb on - strand at 2078.906 kb on - strand at 2078.976 kb on - strand at 2078.995 kb on + strand at 2078.995 kb on + strand at 2078.995 kb on + strand at 2078.995 kb on + strand at 2078.995 kb on + strand at 2078.996 kb on - strand at 2079.051 kb on + strand, within fepC at 2079.095 kb on + strand, within fepC at 2079.222 kb on + strand, within fepC at 2079.222 kb on + strand, within fepC at 2079.223 kb on - strand, within fepC at 2079.429 kb on + strand, within fepC at 2079.430 kb on - strand, within fepC at 2079.523 kb on - strand, within fepC at 2079.549 kb on + strand, within fepC at 2079.748 kb on - strand at 2079.752 kb on - strand at 2079.756 kb on + strand at 2079.756 kb on + strand at 2079.756 kb on + strand at 2079.757 kb on - strand at 2079.810 kb on + strand at 2079.917 kb on - strand, within fepE at 2080.115 kb on - strand, within fepE at 2080.159 kb on + strand, within fepE at 2080.304 kb on - strand, within fepE at 2080.311 kb on - strand, within fepE at 2080.379 kb on - strand, within fepE at 2080.379 kb on - strand, within fepE at 2080.508 kb on - strand, within fepE at 2080.508 kb on - strand, within fepE at 2080.562 kb on + strand, within fepE at 2080.562 kb on + strand, within fepE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 2,077,955 + -1.6 2,077,972 - -0.3 2,078,017 + +1.0 2,078,064 + fepG MCAODC_26810 0.12 -2.4 2,078,098 + fepG MCAODC_26810 0.15 -0.5 2,078,227 - fepG MCAODC_26810 0.28 -1.3 2,078,237 - fepG MCAODC_26810 0.29 -1.4 2,078,392 + fepG MCAODC_26810 0.45 -2.3 2,078,393 - fepG MCAODC_26810 0.45 -1.1 2,078,548 + fepG MCAODC_26810 0.60 +0.7 2,078,548 + fepG MCAODC_26810 0.60 -0.8 2,078,548 + fepG MCAODC_26810 0.60 -1.2 2,078,548 + fepG MCAODC_26810 0.60 -0.4 2,078,548 + fepG MCAODC_26810 0.60 -1.2 2,078,549 - fepG MCAODC_26810 0.60 +0.0 2,078,550 + fepG MCAODC_26810 0.61 +0.7 2,078,550 + fepG MCAODC_26810 0.61 -1.7 2,078,550 + fepG MCAODC_26810 0.61 -1.7 2,078,559 + fepG MCAODC_26810 0.61 -0.5 2,078,758 + fepG MCAODC_26810 0.81 -0.7 2,078,849 - +1.8 2,078,900 + +1.2 2,078,900 + -1.8 2,078,901 - -3.0 2,078,906 - -0.4 2,078,976 - +0.6 2,078,995 + -1.4 2,078,995 + -1.5 2,078,995 + -0.1 2,078,995 + +1.0 2,078,995 + -1.7 2,078,996 - -0.9 2,079,051 + fepC MCAODC_26815 0.14 -2.5 2,079,095 + fepC MCAODC_26815 0.19 -0.8 2,079,222 + fepC MCAODC_26815 0.35 -0.7 2,079,222 + fepC MCAODC_26815 0.35 -2.6 2,079,223 - fepC MCAODC_26815 0.35 -1.2 2,079,429 + fepC MCAODC_26815 0.60 -1.3 2,079,430 - fepC MCAODC_26815 0.60 -1.3 2,079,523 - fepC MCAODC_26815 0.72 +2.0 2,079,549 + fepC MCAODC_26815 0.75 +0.3 2,079,748 - +0.3 2,079,752 - +0.7 2,079,756 + -1.2 2,079,756 + -0.4 2,079,756 + +0.5 2,079,757 - +0.1 2,079,810 + +0.3 2,079,917 - fepE MCAODC_26820 0.15 -0.1 2,080,115 - fepE MCAODC_26820 0.32 -2.2 2,080,159 + fepE MCAODC_26820 0.36 +0.6 2,080,304 - fepE MCAODC_26820 0.49 -1.3 2,080,311 - fepE MCAODC_26820 0.49 +0.3 2,080,379 - fepE MCAODC_26820 0.55 +0.3 2,080,379 - fepE MCAODC_26820 0.55 +0.1 2,080,508 - fepE MCAODC_26820 0.67 +0.0 2,080,508 - fepE MCAODC_26820 0.67 -3.5 2,080,562 + fepE MCAODC_26820 0.72 +0.3 2,080,562 + fepE MCAODC_26820 0.72 +0.4
Or see this region's nucleotide sequence