Strain Fitness in Escherichia coli ECRC101 around MCAODC_24450

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_24440 and ybbA are separated by 547 nucleotidesybbA and MCAODC_24455 are separated by 351 nucleotidesMCAODC_24455 and MCAODC_24460 are separated by 15 nucleotides MCAODC_24440: MCAODC_24440 - Hok/gef family, at 1,605,883 to 1,606,095 _24440 MCAODC_24450: ybbA - iroE, at 1,606,643 to 1,607,416 ybbA MCAODC_24455: MCAODC_24455 - DUF977 domain-containing protein, at 1,607,768 to 1,608,181 _24455 MCAODC_24460: MCAODC_24460 - DUF1627 domain-containing protein, at 1,608,197 to 1,608,967 _24460 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1605.885 kb on - strandat 1606.067 kb on + strand, within MCAODC_24440at 1606.067 kb on + strand, within MCAODC_24440at 1606.067 kb on + strand, within MCAODC_24440at 1606.096 kb on - strandat 1606.193 kb on + strandat 1606.193 kb on + strandat 1606.213 kb on + strandat 1606.218 kb on + strandat 1606.222 kb on + strandat 1606.222 kb on + strandat 1606.222 kb on + strandat 1606.312 kb on + strandat 1606.312 kb on + strandat 1606.313 kb on - strandat 1606.313 kb on - strandat 1606.313 kb on - strandat 1606.313 kb on - strandat 1606.395 kb on - strandat 1606.428 kb on - strandat 1606.503 kb on + strandat 1606.511 kb on + strandat 1606.528 kb on + strandat 1606.528 kb on + strandat 1606.528 kb on + strandat 1606.528 kb on + strandat 1606.611 kb on + strandat 1606.768 kb on - strand, within ybbAat 1607.265 kb on + strand, within ybbAat 1607.340 kb on + strandat 1607.414 kb on + strandat 1607.709 kb on + strandat 1607.710 kb on - strandat 1607.780 kb on + strandat 1607.843 kb on + strand, within MCAODC_24455at 1607.993 kb on + strand, within MCAODC_24455at 1608.013 kb on - strand, within MCAODC_24455at 1608.014 kb on + strand, within MCAODC_24455at 1608.014 kb on + strand, within MCAODC_24455at 1608.014 kb on + strand, within MCAODC_24455at 1608.014 kb on + strand, within MCAODC_24455at 1608.015 kb on - strand, within MCAODC_24455at 1608.015 kb on - strand, within MCAODC_24455at 1608.015 kb on - strand, within MCAODC_24455at 1608.060 kb on + strand, within MCAODC_24455at 1608.122 kb on + strand, within MCAODC_24455at 1608.167 kb on - strandat 1608.170 kb on + strandat 1608.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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1,605,885 - -1.3
1,606,067 + MCAODC_24440 0.86 -0.1
1,606,067 + MCAODC_24440 0.86 -1.3
1,606,067 + MCAODC_24440 0.86 +1.0
1,606,096 - +0.9
1,606,193 + +0.0
1,606,193 + -0.2
1,606,213 + -0.4
1,606,218 + +0.4
1,606,222 + +0.0
1,606,222 + -0.5
1,606,222 + -0.1
1,606,312 + +0.2
1,606,312 + -0.0
1,606,313 - +2.9
1,606,313 - +0.1
1,606,313 - -0.2
1,606,313 - +2.5
1,606,395 - -0.5
1,606,428 - +0.3
1,606,503 + -0.2
1,606,511 + -0.5
1,606,528 + +0.4
1,606,528 + +0.5
1,606,528 + +0.5
1,606,528 + +0.1
1,606,611 + -0.2
1,606,768 - ybbA MCAODC_24450 0.16 -0.5
1,607,265 + ybbA MCAODC_24450 0.80 -2.2
1,607,340 + +0.1
1,607,414 + +0.4
1,607,709 + -0.5
1,607,710 - +1.5
1,607,780 + +1.2
1,607,843 + MCAODC_24455 0.18 +0.3
1,607,993 + MCAODC_24455 0.54 +1.3
1,608,013 - MCAODC_24455 0.59 +1.6
1,608,014 + MCAODC_24455 0.59 -0.6
1,608,014 + MCAODC_24455 0.59 +2.0
1,608,014 + MCAODC_24455 0.59 +0.9
1,608,014 + MCAODC_24455 0.59 +0.8
1,608,015 - MCAODC_24455 0.60 -1.0
1,608,015 - MCAODC_24455 0.60 +0.8
1,608,015 - MCAODC_24455 0.60 -0.9
1,608,060 + MCAODC_24455 0.71 -0.6
1,608,122 + MCAODC_24455 0.86 +1.4
1,608,167 - +1.7
1,608,170 + -1.3
1,608,171 - -0.3

Or see this region's nucleotide sequence