Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_24440 and ybbA are separated by 547 nucleotides ybbA and MCAODC_24455 are separated by 351 nucleotides MCAODC_24455 and MCAODC_24460 are separated by 15 nucleotides
MCAODC_24440: MCAODC_24440 - Hok/gef family, at 1,605,883 to 1,606,095
_24440
MCAODC_24450: ybbA - iroE, at 1,606,643 to 1,607,416
ybbA
MCAODC_24455: MCAODC_24455 - DUF977 domain-containing protein, at 1,607,768 to 1,608,181
_24455
MCAODC_24460: MCAODC_24460 - DUF1627 domain-containing protein, at 1,608,197 to 1,608,967
_24460
Position (kb)
1606
1607
1608 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1605.885 kb on - strand at 1606.067 kb on + strand, within MCAODC_24440 at 1606.067 kb on + strand, within MCAODC_24440 at 1606.067 kb on + strand, within MCAODC_24440 at 1606.096 kb on - strand at 1606.193 kb on + strand at 1606.193 kb on + strand at 1606.213 kb on + strand at 1606.218 kb on + strand at 1606.222 kb on + strand at 1606.222 kb on + strand at 1606.222 kb on + strand at 1606.312 kb on + strand at 1606.312 kb on + strand at 1606.313 kb on - strand at 1606.313 kb on - strand at 1606.313 kb on - strand at 1606.313 kb on - strand at 1606.395 kb on - strand at 1606.428 kb on - strand at 1606.503 kb on + strand at 1606.511 kb on + strand at 1606.528 kb on + strand at 1606.528 kb on + strand at 1606.528 kb on + strand at 1606.528 kb on + strand at 1606.611 kb on + strand at 1606.768 kb on - strand, within ybbA at 1607.265 kb on + strand, within ybbA at 1607.340 kb on + strand at 1607.414 kb on + strand at 1607.709 kb on + strand at 1607.710 kb on - strand at 1607.780 kb on + strand at 1607.843 kb on + strand, within MCAODC_24455 at 1607.993 kb on + strand, within MCAODC_24455 at 1608.013 kb on - strand, within MCAODC_24455 at 1608.014 kb on + strand, within MCAODC_24455 at 1608.014 kb on + strand, within MCAODC_24455 at 1608.014 kb on + strand, within MCAODC_24455 at 1608.014 kb on + strand, within MCAODC_24455 at 1608.015 kb on - strand, within MCAODC_24455 at 1608.015 kb on - strand, within MCAODC_24455 at 1608.015 kb on - strand, within MCAODC_24455 at 1608.060 kb on + strand, within MCAODC_24455 at 1608.122 kb on + strand, within MCAODC_24455 at 1608.167 kb on - strand at 1608.170 kb on + strand at 1608.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 1,605,885 - -1.3 1,606,067 + MCAODC_24440 0.86 -0.1 1,606,067 + MCAODC_24440 0.86 -1.3 1,606,067 + MCAODC_24440 0.86 +1.0 1,606,096 - +0.9 1,606,193 + +0.0 1,606,193 + -0.2 1,606,213 + -0.4 1,606,218 + +0.4 1,606,222 + +0.0 1,606,222 + -0.5 1,606,222 + -0.1 1,606,312 + +0.2 1,606,312 + -0.0 1,606,313 - +2.9 1,606,313 - +0.1 1,606,313 - -0.2 1,606,313 - +2.5 1,606,395 - -0.5 1,606,428 - +0.3 1,606,503 + -0.2 1,606,511 + -0.5 1,606,528 + +0.4 1,606,528 + +0.5 1,606,528 + +0.5 1,606,528 + +0.1 1,606,611 + -0.2 1,606,768 - ybbA MCAODC_24450 0.16 -0.5 1,607,265 + ybbA MCAODC_24450 0.80 -2.2 1,607,340 + +0.1 1,607,414 + +0.4 1,607,709 + -0.5 1,607,710 - +1.5 1,607,780 + +1.2 1,607,843 + MCAODC_24455 0.18 +0.3 1,607,993 + MCAODC_24455 0.54 +1.3 1,608,013 - MCAODC_24455 0.59 +1.6 1,608,014 + MCAODC_24455 0.59 -0.6 1,608,014 + MCAODC_24455 0.59 +2.0 1,608,014 + MCAODC_24455 0.59 +0.9 1,608,014 + MCAODC_24455 0.59 +0.8 1,608,015 - MCAODC_24455 0.60 -1.0 1,608,015 - MCAODC_24455 0.60 +0.8 1,608,015 - MCAODC_24455 0.60 -0.9 1,608,060 + MCAODC_24455 0.71 -0.6 1,608,122 + MCAODC_24455 0.86 +1.4 1,608,167 - +1.7 1,608,170 + -1.3 1,608,171 - -0.3
Or see this region's nucleotide sequence