Strain Fitness in Escherichia coli ECRC101 around MCAODC_23655

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntureD1 and MCAODC_23655 are separated by 380 nucleotidesMCAODC_23655 and opgE are separated by 224 nucleotides MCAODC_23650: ureD1 - Putative urease accessory UreD-like protein, at 1,449,291 to 1,449,989 ureD1 MCAODC_23655: MCAODC_23655 - hypothetical protein, at 1,450,370 to 1,450,645 _23655 MCAODC_23660: opgE - phosphoethanolamine transferase, at 1,450,870 to 1,452,489 opgE Position (kb) 1450 1451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1449.394 kb on - strand, within ureD1at 1449.394 kb on - strand, within ureD1at 1449.394 kb on - strand, within ureD1at 1449.424 kb on + strand, within ureD1at 1449.425 kb on - strand, within ureD1at 1449.468 kb on - strand, within ureD1at 1449.525 kb on + strand, within ureD1at 1449.813 kb on + strand, within ureD1at 1450.092 kb on - strandat 1450.093 kb on + strandat 1450.095 kb on + strandat 1450.095 kb on + strandat 1450.181 kb on + strandat 1450.181 kb on + strandat 1450.181 kb on + strandat 1450.181 kb on + strandat 1450.182 kb on - strandat 1450.182 kb on - strandat 1450.204 kb on + strandat 1450.260 kb on - strandat 1450.316 kb on + strandat 1450.480 kb on + strand, within MCAODC_23655at 1450.541 kb on + strand, within MCAODC_23655at 1450.542 kb on - strand, within MCAODC_23655at 1450.634 kb on - strandat 1450.664 kb on - strandat 1450.723 kb on + strandat 1450.723 kb on + strandat 1450.727 kb on + strandat 1451.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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1,449,394 - ureD1 MCAODC_23650 0.15 +0.5
1,449,394 - ureD1 MCAODC_23650 0.15 +0.6
1,449,394 - ureD1 MCAODC_23650 0.15 -0.7
1,449,424 + ureD1 MCAODC_23650 0.19 +0.0
1,449,425 - ureD1 MCAODC_23650 0.19 -1.0
1,449,468 - ureD1 MCAODC_23650 0.25 -0.1
1,449,525 + ureD1 MCAODC_23650 0.33 +1.9
1,449,813 + ureD1 MCAODC_23650 0.75 -3.2
1,450,092 - -1.5
1,450,093 + +0.8
1,450,095 + +0.0
1,450,095 + +1.0
1,450,181 + -0.4
1,450,181 + +0.2
1,450,181 + -3.3
1,450,181 + -0.3
1,450,182 - -0.4
1,450,182 - +0.4
1,450,204 + +2.3
1,450,260 - -0.3
1,450,316 + -2.0
1,450,480 + MCAODC_23655 0.40 -0.3
1,450,541 + MCAODC_23655 0.62 -1.7
1,450,542 - MCAODC_23655 0.62 -2.2
1,450,634 - +0.4
1,450,664 - +1.5
1,450,723 + -0.3
1,450,723 + +0.0
1,450,727 + -0.4
1,451,007 + +0.7

Or see this region's nucleotide sequence