Strain Fitness in Escherichia coli ECRC101 around MCAODC_23260

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23250 and MCAODC_23255 are separated by 293 nucleotidesMCAODC_23255 and MCAODC_23260 overlap by 4 nucleotidesMCAODC_23260 and MCAODC_23265 are separated by 46 nucleotidesMCAODC_23265 and MCAODC_23270 are separated by 49 nucleotidesMCAODC_23270 and MCAODC_23275 overlap by 1 nucleotidesMCAODC_23275 and yeeS are separated by 62 nucleotides MCAODC_23250: MCAODC_23250 - restriction endonuclease subunit M, at 1,383,924 to 1,384,766 _23250 MCAODC_23255: MCAODC_23255 - DUF5983 domain-containing protein, at 1,385,060 to 1,385,551 _23255 MCAODC_23260: MCAODC_23260 - toxin, at 1,385,548 to 1,385,922 _23260 MCAODC_23265: MCAODC_23265 - antitoxin, at 1,385,969 to 1,386,343 _23265 MCAODC_23270: MCAODC_23270 - Phage-related protein, at 1,386,393 to 1,386,506 _23270 MCAODC_23275: MCAODC_23275 - DUF987 domain-containing protein, at 1,386,506 to 1,386,727 _23275 MCAODC_23280: yeeS - UPF0758 protein YeeS, at 1,386,790 to 1,387,266 yeeS Position (kb) 1385 1386Strain fitness (log2 ratio) -2 -1 0 1at 1384.643 kb on + strand, within MCAODC_23250at 1384.644 kb on - strand, within MCAODC_23250at 1384.667 kb on + strand, within MCAODC_23250at 1384.713 kb on - strandat 1384.721 kb on + strandat 1385.078 kb on + strandat 1385.465 kb on - strand, within MCAODC_23255at 1385.649 kb on + strand, within MCAODC_23260at 1385.649 kb on + strand, within MCAODC_23260at 1385.734 kb on - strand, within MCAODC_23260at 1385.767 kb on - strand, within MCAODC_23260at 1385.888 kb on - strandat 1385.896 kb on + strandat 1385.897 kb on - strandat 1385.925 kb on + strandat 1385.926 kb on - strandat 1385.936 kb on + strandat 1385.943 kb on + strandat 1386.079 kb on + strand, within MCAODC_23265at 1386.080 kb on - strand, within MCAODC_23265at 1386.165 kb on + strand, within MCAODC_23265at 1386.165 kb on + strand, within MCAODC_23265at 1386.165 kb on + strand, within MCAODC_23265at 1386.165 kb on + strand, within MCAODC_23265at 1386.165 kb on + strand, within MCAODC_23265at 1386.166 kb on - strand, within MCAODC_23265at 1386.166 kb on - strand, within MCAODC_23265at 1386.166 kb on - strand, within MCAODC_23265at 1386.166 kb on - strand, within MCAODC_23265at 1386.216 kb on + strand, within MCAODC_23265at 1386.381 kb on - strandat 1386.427 kb on + strand, within MCAODC_23270at 1386.427 kb on + strand, within MCAODC_23270at 1386.427 kb on + strand, within MCAODC_23270at 1386.428 kb on - strand, within MCAODC_23270at 1386.428 kb on - strand, within MCAODC_23270at 1386.428 kb on - strand, within MCAODC_23270at 1386.428 kb on - strand, within MCAODC_23270at 1386.537 kb on + strand, within MCAODC_23275at 1386.537 kb on + strand, within MCAODC_23275at 1386.538 kb on - strand, within MCAODC_23275at 1386.538 kb on - strand, within MCAODC_23275at 1386.613 kb on + strand, within MCAODC_23275at 1386.614 kb on - strand, within MCAODC_23275at 1386.615 kb on + strand, within MCAODC_23275at 1386.615 kb on + strand, within MCAODC_23275at 1386.615 kb on + strand, within MCAODC_23275at 1386.616 kb on - strand, within MCAODC_23275at 1386.642 kb on + strand, within MCAODC_23275at 1386.646 kb on + strand, within MCAODC_23275at 1386.653 kb on - strand, within MCAODC_23275at 1386.694 kb on + strand, within MCAODC_23275

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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1,384,643 + MCAODC_23250 0.85 -0.2
1,384,644 - MCAODC_23250 0.85 +1.4
1,384,667 + MCAODC_23250 0.88 +0.2
1,384,713 - -0.9
1,384,721 + -0.5
1,385,078 + -0.1
1,385,465 - MCAODC_23255 0.82 -0.2
1,385,649 + MCAODC_23260 0.27 +0.6
1,385,649 + MCAODC_23260 0.27 -0.8
1,385,734 - MCAODC_23260 0.50 -1.4
1,385,767 - MCAODC_23260 0.58 -2.4
1,385,888 - +1.0
1,385,896 + +1.4
1,385,897 - -1.2
1,385,925 + +0.2
1,385,926 - -1.5
1,385,936 + +0.2
1,385,943 + -0.0
1,386,079 + MCAODC_23265 0.29 +0.1
1,386,080 - MCAODC_23265 0.30 +1.1
1,386,165 + MCAODC_23265 0.52 -0.6
1,386,165 + MCAODC_23265 0.52 -0.4
1,386,165 + MCAODC_23265 0.52 -1.0
1,386,165 + MCAODC_23265 0.52 -1.1
1,386,165 + MCAODC_23265 0.52 -0.3
1,386,166 - MCAODC_23265 0.53 -1.1
1,386,166 - MCAODC_23265 0.53 -1.5
1,386,166 - MCAODC_23265 0.53 +0.0
1,386,166 - MCAODC_23265 0.53 -0.9
1,386,216 + MCAODC_23265 0.66 +0.9
1,386,381 - +0.2
1,386,427 + MCAODC_23270 0.30 -0.5
1,386,427 + MCAODC_23270 0.30 -1.1
1,386,427 + MCAODC_23270 0.30 +1.5
1,386,428 - MCAODC_23270 0.31 -1.9
1,386,428 - MCAODC_23270 0.31 -0.5
1,386,428 - MCAODC_23270 0.31 -0.6
1,386,428 - MCAODC_23270 0.31 +0.9
1,386,537 + MCAODC_23275 0.14 -0.4
1,386,537 + MCAODC_23275 0.14 +1.2
1,386,538 - MCAODC_23275 0.14 -0.8
1,386,538 - MCAODC_23275 0.14 +0.9
1,386,613 + MCAODC_23275 0.48 +0.5
1,386,614 - MCAODC_23275 0.49 -0.4
1,386,615 + MCAODC_23275 0.49 +0.4
1,386,615 + MCAODC_23275 0.49 +0.1
1,386,615 + MCAODC_23275 0.49 +1.0
1,386,616 - MCAODC_23275 0.50 +0.5
1,386,642 + MCAODC_23275 0.61 -0.5
1,386,646 + MCAODC_23275 0.63 +0.5
1,386,653 - MCAODC_23275 0.66 +0.2
1,386,694 + MCAODC_23275 0.85 +0.8

Or see this region's nucleotide sequence