Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prc and proQ are separated by 19 nucleotides proQ and msrC are separated by 96 nucleotides msrC and yebS are separated by 75 nucleotides
MCAODC_18940: prc - carboxy terminal-processing peptidase, at 643,866 to 645,914
prc
MCAODC_18945: proQ - RNA chaperone ProQ, at 645,934 to 646,632
proQ
MCAODC_18950: msrC - L-methionine (R)-S-oxide reductase, at 646,729 to 647,280
msrC
MCAODC_18955: yebS - membrane integrity lipid transport subunit YebS, at 647,356 to 648,639
yebS
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.997 kb on + strand, within prc at 645.090 kb on - strand, within prc at 645.096 kb on - strand, within prc at 645.174 kb on - strand, within prc at 645.232 kb on + strand, within prc at 645.233 kb on - strand, within prc at 645.240 kb on - strand, within prc at 645.391 kb on - strand, within prc at 645.411 kb on - strand, within prc at 645.476 kb on + strand, within prc at 645.476 kb on + strand, within prc at 645.477 kb on - strand, within prc at 645.477 kb on - strand, within prc at 645.478 kb on + strand, within prc at 645.478 kb on + strand, within prc at 645.478 kb on + strand, within prc at 645.478 kb on + strand, within prc at 645.479 kb on - strand, within prc at 645.479 kb on - strand, within prc at 645.530 kb on - strand, within prc at 645.811 kb on - strand at 645.840 kb on - strand at 645.847 kb on - strand at 645.886 kb on - strand at 646.019 kb on - strand, within proQ at 646.346 kb on - strand, within proQ at 646.346 kb on - strand, within proQ at 646.346 kb on - strand, within proQ at 646.443 kb on - strand, within proQ at 646.443 kb on - strand, within proQ at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.646 kb on + strand at 646.657 kb on + strand at 646.658 kb on - strand at 646.691 kb on - strand at 646.692 kb on + strand at 646.693 kb on - strand at 646.693 kb on - strand at 646.714 kb on + strand at 646.761 kb on - strand at 646.808 kb on - strand, within msrC at 646.848 kb on + strand, within msrC at 646.852 kb on - strand, within msrC at 646.852 kb on - strand, within msrC at 646.936 kb on - strand, within msrC at 646.936 kb on - strand, within msrC at 646.936 kb on - strand, within msrC at 647.067 kb on + strand, within msrC at 647.068 kb on - strand, within msrC at 647.068 kb on - strand, within msrC at 647.101 kb on + strand, within msrC at 647.121 kb on - strand, within msrC at 647.121 kb on - strand, within msrC at 647.122 kb on + strand, within msrC at 647.122 kb on + strand, within msrC at 647.122 kb on + strand, within msrC at 647.123 kb on - strand, within msrC at 647.123 kb on - strand, within msrC at 647.123 kb on - strand, within msrC at 647.207 kb on + strand, within msrC at 647.229 kb on + strand at 647.229 kb on + strand at 647.230 kb on - strand at 647.232 kb on - strand at 647.232 kb on - strand at 647.232 kb on - strand at 647.249 kb on - strand at 647.267 kb on - strand at 647.270 kb on - strand at 647.281 kb on + strand at 647.281 kb on + strand at 647.281 kb on + strand at 647.281 kb on + strand at 647.282 kb on - strand at 647.319 kb on + strand at 647.325 kb on + strand at 647.326 kb on - strand at 647.342 kb on - strand at 647.364 kb on + strand at 647.365 kb on - strand at 647.365 kb on - strand at 647.397 kb on - strand at 647.397 kb on - strand at 647.503 kb on + strand, within yebS at 647.625 kb on + strand, within yebS at 647.626 kb on - strand, within yebS at 647.626 kb on - strand, within yebS
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 644,997 + prc MCAODC_18940 0.55 -0.7 645,090 - prc MCAODC_18940 0.60 -1.6 645,096 - prc MCAODC_18940 0.60 -2.8 645,174 - prc MCAODC_18940 0.64 -0.1 645,232 + prc MCAODC_18940 0.67 -2.2 645,233 - prc MCAODC_18940 0.67 -1.3 645,240 - prc MCAODC_18940 0.67 +0.6 645,391 - prc MCAODC_18940 0.74 -2.1 645,411 - prc MCAODC_18940 0.75 +0.7 645,476 + prc MCAODC_18940 0.79 -1.1 645,476 + prc MCAODC_18940 0.79 -1.9 645,477 - prc MCAODC_18940 0.79 -0.9 645,477 - prc MCAODC_18940 0.79 -1.4 645,478 + prc MCAODC_18940 0.79 -1.0 645,478 + prc MCAODC_18940 0.79 -0.2 645,478 + prc MCAODC_18940 0.79 -1.9 645,478 + prc MCAODC_18940 0.79 +1.9 645,479 - prc MCAODC_18940 0.79 -0.4 645,479 - prc MCAODC_18940 0.79 +0.8 645,530 - prc MCAODC_18940 0.81 -1.2 645,811 - -1.3 645,840 - -1.1 645,847 - +0.8 645,886 - +0.4 646,019 - proQ MCAODC_18945 0.12 +0.6 646,346 - proQ MCAODC_18945 0.59 -0.7 646,346 - proQ MCAODC_18945 0.59 -0.3 646,346 - proQ MCAODC_18945 0.59 +0.7 646,443 - proQ MCAODC_18945 0.73 -2.4 646,443 - proQ MCAODC_18945 0.73 -2.8 646,618 - -1.3 646,618 - +0.8 646,618 - -0.8 646,646 + -0.7 646,657 + -0.2 646,658 - -0.8 646,691 - +0.1 646,692 + -0.9 646,693 - -0.2 646,693 - -0.6 646,714 + +0.6 646,761 - -1.6 646,808 - msrC MCAODC_18950 0.14 +2.6 646,848 + msrC MCAODC_18950 0.22 +2.6 646,852 - msrC MCAODC_18950 0.22 +0.8 646,852 - msrC MCAODC_18950 0.22 +0.4 646,936 - msrC MCAODC_18950 0.38 -0.1 646,936 - msrC MCAODC_18950 0.38 -0.2 646,936 - msrC MCAODC_18950 0.38 +0.0 647,067 + msrC MCAODC_18950 0.61 -0.7 647,068 - msrC MCAODC_18950 0.61 +0.5 647,068 - msrC MCAODC_18950 0.61 -0.4 647,101 + msrC MCAODC_18950 0.67 +0.1 647,121 - msrC MCAODC_18950 0.71 +0.8 647,121 - msrC MCAODC_18950 0.71 +0.0 647,122 + msrC MCAODC_18950 0.71 -0.3 647,122 + msrC MCAODC_18950 0.71 -0.9 647,122 + msrC MCAODC_18950 0.71 -0.4 647,123 - msrC MCAODC_18950 0.71 -0.9 647,123 - msrC MCAODC_18950 0.71 -0.3 647,123 - msrC MCAODC_18950 0.71 +0.2 647,207 + msrC MCAODC_18950 0.87 +2.2 647,229 + +0.1 647,229 + -0.0 647,230 - +0.4 647,232 - -0.9 647,232 - -0.7 647,232 - +0.2 647,249 - -0.4 647,267 - -0.9 647,270 - +0.3 647,281 + -2.9 647,281 + +0.7 647,281 + +0.3 647,281 + +0.3 647,282 - -0.2 647,319 + -0.7 647,325 + +0.1 647,326 - +0.9 647,342 - -0.3 647,364 + +0.2 647,365 - +1.8 647,365 - +0.8 647,397 - -0.6 647,397 - +0.3 647,503 + yebS MCAODC_18955 0.11 +0.1 647,625 + yebS MCAODC_18955 0.21 +0.1 647,626 - yebS MCAODC_18955 0.21 -0.6 647,626 - yebS MCAODC_18955 0.21 +0.7
Or see this region's nucleotide sequence