Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt espP and insA are separated by 464 nucleotides
MCAODC_15205: espP - serine protease autotransporter EspP, at 21,688 to 25,590
espP
MCAODC_15210: insA - Transposase InsA, at 26,055 to 26,327
insA
Position (kb) 26
27 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 25.060 kb on + strand, within espP at 25.060 kb on + strand, within espP at 25.060 kb on + strand, within espP at 25.060 kb on + strand, within espP at 25.060 kb on + strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.061 kb on - strand, within espP at 25.075 kb on - strand, within espP at 25.117 kb on + strand, within espP at 25.117 kb on + strand, within espP at 25.118 kb on - strand, within espP at 25.118 kb on - strand, within espP at 25.118 kb on - strand, within espP at 25.136 kb on - strand, within espP at 25.163 kb on - strand, within espP at 25.210 kb on + strand at 25.282 kb on + strand at 25.282 kb on + strand at 25.282 kb on + strand at 25.283 kb on - strand at 25.335 kb on + strand at 25.335 kb on + strand at 25.458 kb on + strand at 25.458 kb on + strand at 25.459 kb on - strand at 25.459 kb on - strand at 25.539 kb on + strand at 25.540 kb on - strand at 25.543 kb on + strand at 25.555 kb on - strand at 25.624 kb on - strand at 25.647 kb on + strand at 25.647 kb on + strand at 25.647 kb on + strand at 25.648 kb on - strand at 25.648 kb on - strand at 25.648 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.691 kb on + strand at 25.691 kb on + strand at 25.692 kb on - strand at 25.704 kb on + strand at 25.717 kb on - strand at 25.717 kb on - strand at 25.741 kb on + strand at 25.741 kb on + strand at 25.741 kb on + strand at 25.741 kb on + strand at 25.741 kb on + strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.742 kb on - strand at 25.782 kb on + strand at 25.783 kb on - strand at 25.825 kb on - strand at 25.839 kb on + strand at 25.839 kb on + strand at 25.860 kb on + strand at 25.860 kb on + strand at 25.861 kb on - strand at 25.869 kb on + strand at 25.869 kb on + strand at 25.870 kb on - strand at 25.919 kb on + strand at 25.920 kb on - strand at 25.920 kb on - strand at 25.949 kb on + strand at 25.949 kb on + strand at 25.949 kb on + strand at 25.950 kb on - strand at 25.950 kb on - strand at 25.950 kb on - strand at 25.950 kb on - strand at 25.950 kb on - strand at 25.956 kb on - strand at 25.980 kb on + strand at 25.990 kb on - strand at 26.056 kb on + strand at 26.096 kb on + strand, within insA at 26.097 kb on - strand, within insA at 26.097 kb on - strand, within insA at 26.099 kb on + strand, within insA at 26.100 kb on - strand, within insA at 26.100 kb on - strand, within insA at 26.118 kb on - strand, within insA at 26.118 kb on - strand, within insA at 26.187 kb on - strand, within insA at 26.329 kb on - strand at 26.338 kb on + strand at 26.338 kb on + strand at 26.348 kb on + strand at 26.349 kb on - strand at 26.349 kb on - strand at 26.349 kb on - strand at 26.349 kb on - strand at 26.351 kb on + strand at 26.351 kb on + strand at 26.352 kb on - strand at 26.352 kb on - strand at 26.352 kb on - strand at 26.354 kb on - strand at 26.368 kb on + strand at 26.391 kb on + strand at 26.391 kb on + strand at 26.392 kb on - strand at 26.440 kb on - strand at 26.440 kb on - strand at 26.444 kb on + strand at 26.467 kb on + strand at 26.477 kb on - strand at 26.506 kb on - strand at 26.528 kb on + strand at 26.539 kb on + strand at 26.540 kb on - strand at 26.569 kb on + strand at 26.579 kb on + strand at 26.580 kb on - strand at 26.588 kb on + strand at 26.589 kb on - strand at 26.595 kb on + strand at 26.596 kb on - strand at 26.596 kb on - strand at 26.599 kb on + strand at 26.648 kb on - strand at 26.666 kb on - strand at 26.666 kb on - strand at 26.716 kb on + strand at 26.717 kb on - strand at 26.743 kb on + strand at 26.743 kb on + strand at 26.744 kb on - strand at 26.750 kb on + strand at 26.752 kb on + strand at 26.753 kb on - strand at 26.798 kb on + strand at 26.876 kb on + strand at 26.909 kb on - strand at 27.008 kb on + strand at 27.009 kb on - strand at 27.050 kb on + strand at 27.051 kb on - strand at 27.069 kb on - strand at 27.076 kb on - strand at 27.103 kb on + strand at 27.103 kb on + strand at 27.104 kb on - strand at 27.106 kb on + strand at 27.106 kb on + strand at 27.107 kb on - strand at 27.107 kb on - strand at 27.107 kb on - strand at 27.110 kb on + strand at 27.110 kb on + strand at 27.111 kb on - strand at 27.112 kb on + strand at 27.113 kb on - strand at 27.206 kb on + strand at 27.248 kb on + strand at 27.248 kb on + strand at 27.248 kb on + strand at 27.249 kb on - strand at 27.270 kb on - strand at 27.273 kb on + strand at 27.273 kb on + strand at 27.274 kb on - strand at 27.281 kb on - strand at 27.300 kb on + strand at 27.301 kb on - strand at 27.301 kb on - strand at 27.301 kb on - strand at 27.301 kb on - strand at 27.303 kb on + strand at 27.303 kb on + strand at 27.304 kb on - strand at 27.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 25,060 + espP MCAODC_15205 0.86 -1.4 25,060 + espP MCAODC_15205 0.86 +2.0 25,060 + espP MCAODC_15205 0.86 +0.0 25,060 + espP MCAODC_15205 0.86 +0.0 25,060 + espP MCAODC_15205 0.86 -0.7 25,061 - espP MCAODC_15205 0.86 -0.7 25,061 - espP MCAODC_15205 0.86 +2.3 25,061 - espP MCAODC_15205 0.86 +0.6 25,061 - espP MCAODC_15205 0.86 +1.2 25,061 - espP MCAODC_15205 0.86 -2.6 25,061 - espP MCAODC_15205 0.86 +0.4 25,061 - espP MCAODC_15205 0.86 +0.4 25,061 - espP MCAODC_15205 0.86 -0.7 25,075 - espP MCAODC_15205 0.87 -0.3 25,117 + espP MCAODC_15205 0.88 +0.1 25,117 + espP MCAODC_15205 0.88 +1.0 25,118 - espP MCAODC_15205 0.88 +0.5 25,118 - espP MCAODC_15205 0.88 +0.6 25,118 - espP MCAODC_15205 0.88 +0.4 25,136 - espP MCAODC_15205 0.88 +0.7 25,163 - espP MCAODC_15205 0.89 +1.6 25,210 + +1.1 25,282 + +1.6 25,282 + +0.8 25,282 + +0.6 25,283 - +0.0 25,335 + +1.4 25,335 + -0.7 25,458 + -0.5 25,458 + +0.6 25,459 - +0.3 25,459 - -0.8 25,539 + -1.9 25,540 - +1.5 25,543 + +0.5 25,555 - -0.1 25,624 - +0.7 25,647 + +0.6 25,647 + -1.1 25,647 + -0.3 25,648 - -1.0 25,648 - -0.5 25,648 - -0.2 25,688 - +1.4 25,688 - +0.3 25,691 + +0.2 25,691 + +1.6 25,692 - +2.6 25,704 + +0.5 25,717 - -0.7 25,717 - +0.3 25,741 + +0.7 25,741 + +1.1 25,741 + +0.2 25,741 + +1.2 25,741 + +1.5 25,742 - +1.0 25,742 - +0.2 25,742 - -0.4 25,742 - +0.6 25,742 - +0.1 25,742 - +0.5 25,742 - -0.4 25,742 - +2.4 25,742 - +0.4 25,742 - +1.4 25,742 - -1.2 25,742 - +1.1 25,782 + -0.7 25,783 - -1.2 25,825 - -1.6 25,839 + -2.1 25,839 + +1.8 25,860 + +1.5 25,860 + -0.5 25,861 - -2.4 25,869 + +0.8 25,869 + +0.2 25,870 - +1.5 25,919 + +0.8 25,920 - -1.2 25,920 - -0.3 25,949 + -1.1 25,949 + -0.0 25,949 + +1.9 25,950 - +0.6 25,950 - +0.1 25,950 - -0.6 25,950 - -0.8 25,950 - -0.1 25,956 - -0.6 25,980 + +1.5 25,990 - +2.4 26,056 + +0.2 26,096 + insA MCAODC_15210 0.15 -0.5 26,097 - insA MCAODC_15210 0.15 +1.2 26,097 - insA MCAODC_15210 0.15 -1.1 26,099 + insA MCAODC_15210 0.16 -0.1 26,100 - insA MCAODC_15210 0.16 +0.0 26,100 - insA MCAODC_15210 0.16 +0.3 26,118 - insA MCAODC_15210 0.23 -1.0 26,118 - insA MCAODC_15210 0.23 +0.1 26,187 - insA MCAODC_15210 0.48 -0.5 26,329 - +0.1 26,338 + +0.5 26,338 + -0.4 26,348 + -0.4 26,349 - -0.1 26,349 - +0.1 26,349 - +0.2 26,349 - -0.3 26,351 + +1.6 26,351 + +0.4 26,352 - +1.8 26,352 - -1.5 26,352 - -0.2 26,354 - -1.7 26,368 + -1.4 26,391 + +2.8 26,391 + -0.6 26,392 - +1.1 26,440 - -0.3 26,440 - -0.4 26,444 + +0.8 26,467 + +0.1 26,477 - +0.2 26,506 - +0.5 26,528 + +0.4 26,539 + +2.4 26,540 - +1.2 26,569 + +3.0 26,579 + -0.5 26,580 - +0.3 26,588 + -0.2 26,589 - +0.7 26,595 + -0.4 26,596 - +0.8 26,596 - +2.2 26,599 + +0.4 26,648 - -1.1 26,666 - +0.8 26,666 - +0.3 26,716 + -0.4 26,717 - +0.9 26,743 + -0.8 26,743 + +0.9 26,744 - -1.1 26,750 + +0.6 26,752 + +1.6 26,753 - +0.2 26,798 + +0.3 26,876 + -0.5 26,909 - -0.5 27,008 + +0.2 27,009 - -2.5 27,050 + +0.2 27,051 - +2.3 27,069 - +1.4 27,076 - +0.1 27,103 + -1.3 27,103 + +1.2 27,104 - +0.6 27,106 + +0.6 27,106 + +0.4 27,107 - -0.9 27,107 - +1.2 27,107 - +0.2 27,110 + +1.6 27,110 + +0.5 27,111 - +0.6 27,112 + +1.6 27,113 - +1.9 27,206 + +2.4 27,248 + +0.7 27,248 + +1.4 27,248 + +1.7 27,249 - +4.6 27,270 - -0.1 27,273 + +0.6 27,273 + +0.1 27,274 - +0.4 27,281 - -0.1 27,300 + -0.5 27,301 - +0.9 27,301 - -1.3 27,301 - -0.4 27,301 - +1.8 27,303 + +0.6 27,303 + -0.1 27,304 - -0.2 27,304 - -0.1
Or see this region's nucleotide sequence