Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cvpA and purF are separated by 36 nucleotides purF and ubiX are separated by 94 nucleotides ubiX and argT are separated by 265 nucleotides
MCAODC_13750: cvpA - colicin V production protein, at 2,690,787 to 2,691,275
cvpA
MCAODC_13755: purF - amidophosphoribosyltransferase, at 2,691,312 to 2,692,829
purF
MCAODC_13760: ubiX - flavin prenyltransferase UbiX, at 2,692,924 to 2,693,493
ubiX
MCAODC_13765: argT - lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT, at 2,693,759 to 2,694,541
argT
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 2690.399 kb on + strand at 2690.491 kb on - strand at 2690.491 kb on - strand at 2690.499 kb on - strand at 2690.581 kb on + strand at 2690.607 kb on + strand at 2690.738 kb on + strand at 2690.786 kb on + strand at 2690.786 kb on + strand at 2690.787 kb on - strand at 2690.916 kb on + strand, within cvpA at 2690.919 kb on + strand, within cvpA at 2690.920 kb on - strand, within cvpA at 2690.920 kb on - strand, within cvpA at 2690.925 kb on + strand, within cvpA at 2691.131 kb on + strand, within cvpA at 2691.131 kb on + strand, within cvpA at 2691.185 kb on + strand, within cvpA at 2691.215 kb on + strand, within cvpA at 2691.237 kb on + strand at 2691.273 kb on + strand at 2691.274 kb on - strand at 2691.295 kb on - strand at 2691.311 kb on + strand at 2691.311 kb on + strand at 2691.311 kb on + strand at 2691.311 kb on + strand at 2691.311 kb on + strand at 2691.311 kb on + strand at 2691.341 kb on + strand at 2691.363 kb on + strand at 2691.364 kb on - strand at 2691.421 kb on + strand at 2691.421 kb on + strand at 2691.421 kb on + strand at 2691.421 kb on + strand at 2691.421 kb on + strand at 2691.421 kb on + strand at 2691.421 kb on + strand at 2691.422 kb on - strand at 2691.422 kb on - strand at 2691.422 kb on - strand at 2691.475 kb on + strand, within purF at 2691.475 kb on + strand, within purF at 2691.476 kb on - strand, within purF at 2691.476 kb on - strand, within purF at 2691.476 kb on - strand, within purF at 2691.492 kb on - strand, within purF at 2691.579 kb on + strand, within purF at 2691.580 kb on - strand, within purF at 2691.585 kb on - strand, within purF at 2691.585 kb on - strand, within purF at 2691.602 kb on + strand, within purF at 2691.602 kb on + strand, within purF at 2691.711 kb on - strand, within purF at 2691.711 kb on - strand, within purF at 2691.713 kb on + strand, within purF at 2691.714 kb on - strand, within purF at 2691.714 kb on - strand, within purF at 2691.789 kb on - strand, within purF at 2691.813 kb on + strand, within purF at 2691.813 kb on + strand, within purF at 2691.813 kb on + strand, within purF at 2691.814 kb on - strand, within purF at 2691.834 kb on - strand, within purF at 2691.846 kb on - strand, within purF at 2691.924 kb on + strand, within purF at 2691.924 kb on + strand, within purF at 2691.925 kb on - strand, within purF at 2691.925 kb on - strand, within purF at 2691.925 kb on - strand, within purF at 2691.925 kb on - strand, within purF at 2691.925 kb on - strand, within purF at 2691.926 kb on + strand, within purF at 2691.926 kb on + strand, within purF at 2691.926 kb on + strand, within purF at 2691.927 kb on - strand, within purF at 2692.006 kb on - strand, within purF at 2692.006 kb on - strand, within purF at 2692.080 kb on + strand, within purF at 2692.081 kb on - strand, within purF at 2692.081 kb on - strand, within purF at 2692.081 kb on - strand, within purF at 2692.081 kb on - strand, within purF at 2692.084 kb on + strand, within purF at 2692.084 kb on + strand, within purF at 2692.084 kb on + strand, within purF at 2692.084 kb on + strand, within purF at 2692.084 kb on + strand, within purF at 2692.084 kb on + strand, within purF at 2692.085 kb on - strand, within purF at 2692.086 kb on + strand, within purF at 2692.086 kb on + strand, within purF at 2692.086 kb on + strand, within purF at 2692.086 kb on + strand, within purF at 2692.087 kb on - strand, within purF at 2692.087 kb on - strand, within purF at 2692.087 kb on - strand, within purF at 2692.359 kb on - strand, within purF at 2692.419 kb on - strand, within purF at 2692.486 kb on - strand, within purF at 2692.486 kb on - strand, within purF at 2692.527 kb on + strand, within purF at 2692.528 kb on - strand, within purF at 2692.539 kb on - strand, within purF at 2692.539 kb on - strand, within purF at 2692.708 kb on - strand at 2692.734 kb on + strand at 2692.735 kb on - strand at 2692.756 kb on + strand at 2692.757 kb on - strand at 2692.757 kb on - strand at 2692.760 kb on + strand at 2692.761 kb on - strand at 2692.919 kb on + strand at 2692.919 kb on + strand at 2693.593 kb on + strand at 2693.600 kb on + strand at 2693.600 kb on + strand at 2693.601 kb on - strand at 2693.613 kb on - strand at 2693.680 kb on + strand at 2693.680 kb on + strand at 2693.719 kb on + strand at 2693.719 kb on + strand at 2693.720 kb on - strand at 2693.720 kb on - strand at 2693.728 kb on + strand at 2693.754 kb on + strand at 2693.754 kb on + strand at 2693.758 kb on + strand at 2693.758 kb on + strand at 2693.759 kb on - strand at 2693.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 2,690,399 + +0.8 2,690,491 - +0.0 2,690,491 - +0.9 2,690,499 - +0.6 2,690,581 + +0.7 2,690,607 + +0.1 2,690,738 + -1.6 2,690,786 + -1.5 2,690,786 + -1.6 2,690,787 - +0.4 2,690,916 + cvpA MCAODC_13750 0.26 -1.1 2,690,919 + cvpA MCAODC_13750 0.27 -1.2 2,690,920 - cvpA MCAODC_13750 0.27 -0.5 2,690,920 - cvpA MCAODC_13750 0.27 -2.3 2,690,925 + cvpA MCAODC_13750 0.28 -2.5 2,691,131 + cvpA MCAODC_13750 0.70 -2.8 2,691,131 + cvpA MCAODC_13750 0.70 -2.2 2,691,185 + cvpA MCAODC_13750 0.81 -0.6 2,691,215 + cvpA MCAODC_13750 0.88 -2.9 2,691,237 + -1.0 2,691,273 + +0.7 2,691,274 - -1.5 2,691,295 - -1.1 2,691,311 + -3.3 2,691,311 + -4.0 2,691,311 + -5.8 2,691,311 + +0.1 2,691,311 + -3.1 2,691,311 + -3.0 2,691,341 + -1.7 2,691,363 + -2.6 2,691,364 - -2.0 2,691,421 + -3.1 2,691,421 + -2.7 2,691,421 + -4.8 2,691,421 + -1.8 2,691,421 + -4.7 2,691,421 + -3.2 2,691,421 + -3.8 2,691,422 - -2.0 2,691,422 - -3.2 2,691,422 - -2.8 2,691,475 + purF MCAODC_13755 0.11 -2.7 2,691,475 + purF MCAODC_13755 0.11 -4.4 2,691,476 - purF MCAODC_13755 0.11 -2.9 2,691,476 - purF MCAODC_13755 0.11 -3.8 2,691,476 - purF MCAODC_13755 0.11 -1.3 2,691,492 - purF MCAODC_13755 0.12 -1.0 2,691,579 + purF MCAODC_13755 0.18 -3.1 2,691,580 - purF MCAODC_13755 0.18 -3.7 2,691,585 - purF MCAODC_13755 0.18 -2.0 2,691,585 - purF MCAODC_13755 0.18 -0.6 2,691,602 + purF MCAODC_13755 0.19 -2.3 2,691,602 + purF MCAODC_13755 0.19 -2.4 2,691,711 - purF MCAODC_13755 0.26 -2.4 2,691,711 - purF MCAODC_13755 0.26 -5.4 2,691,713 + purF MCAODC_13755 0.26 -2.4 2,691,714 - purF MCAODC_13755 0.26 -2.0 2,691,714 - purF MCAODC_13755 0.26 -2.7 2,691,789 - purF MCAODC_13755 0.31 -3.3 2,691,813 + purF MCAODC_13755 0.33 -2.9 2,691,813 + purF MCAODC_13755 0.33 -2.0 2,691,813 + purF MCAODC_13755 0.33 -4.3 2,691,814 - purF MCAODC_13755 0.33 -3.5 2,691,834 - purF MCAODC_13755 0.34 -4.1 2,691,846 - purF MCAODC_13755 0.35 -1.5 2,691,924 + purF MCAODC_13755 0.40 +3.4 2,691,924 + purF MCAODC_13755 0.40 -3.6 2,691,925 - purF MCAODC_13755 0.40 -3.4 2,691,925 - purF MCAODC_13755 0.40 -1.8 2,691,925 - purF MCAODC_13755 0.40 +0.4 2,691,925 - purF MCAODC_13755 0.40 +1.9 2,691,925 - purF MCAODC_13755 0.40 +0.2 2,691,926 + purF MCAODC_13755 0.40 -4.8 2,691,926 + purF MCAODC_13755 0.40 -3.4 2,691,926 + purF MCAODC_13755 0.40 -2.4 2,691,927 - purF MCAODC_13755 0.41 -4.5 2,692,006 - purF MCAODC_13755 0.46 -3.1 2,692,006 - purF MCAODC_13755 0.46 -3.0 2,692,080 + purF MCAODC_13755 0.51 -3.1 2,692,081 - purF MCAODC_13755 0.51 -0.3 2,692,081 - purF MCAODC_13755 0.51 -1.3 2,692,081 - purF MCAODC_13755 0.51 -3.3 2,692,081 - purF MCAODC_13755 0.51 -1.1 2,692,084 + purF MCAODC_13755 0.51 -3.1 2,692,084 + purF MCAODC_13755 0.51 -3.4 2,692,084 + purF MCAODC_13755 0.51 -3.2 2,692,084 + purF MCAODC_13755 0.51 -0.7 2,692,084 + purF MCAODC_13755 0.51 -2.1 2,692,084 + purF MCAODC_13755 0.51 -3.9 2,692,085 - purF MCAODC_13755 0.51 -2.4 2,692,086 + purF MCAODC_13755 0.51 -2.7 2,692,086 + purF MCAODC_13755 0.51 -2.6 2,692,086 + purF MCAODC_13755 0.51 -3.2 2,692,086 + purF MCAODC_13755 0.51 -2.6 2,692,087 - purF MCAODC_13755 0.51 -3.3 2,692,087 - purF MCAODC_13755 0.51 -1.6 2,692,087 - purF MCAODC_13755 0.51 -2.5 2,692,359 - purF MCAODC_13755 0.69 -0.8 2,692,419 - purF MCAODC_13755 0.73 -0.6 2,692,486 - purF MCAODC_13755 0.77 -4.4 2,692,486 - purF MCAODC_13755 0.77 -1.1 2,692,527 + purF MCAODC_13755 0.80 -2.3 2,692,528 - purF MCAODC_13755 0.80 -3.8 2,692,539 - purF MCAODC_13755 0.81 -2.0 2,692,539 - purF MCAODC_13755 0.81 -1.1 2,692,708 - -4.1 2,692,734 + -0.0 2,692,735 - -3.2 2,692,756 + -0.7 2,692,757 - -3.4 2,692,757 - -1.2 2,692,760 + -3.4 2,692,761 - -2.2 2,692,919 + -1.6 2,692,919 + -0.4 2,693,593 + -0.5 2,693,600 + +0.6 2,693,600 + -0.0 2,693,601 - +0.3 2,693,613 - +0.3 2,693,680 + -0.4 2,693,680 + +0.0 2,693,719 + +0.0 2,693,719 + +0.7 2,693,720 - -0.3 2,693,720 - -0.3 2,693,728 + +0.9 2,693,754 + +1.4 2,693,754 + +0.6 2,693,758 + +0.6 2,693,758 + -0.0 2,693,759 - +1.3 2,693,820 - +0.2
Or see this region's nucleotide sequence