Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_11500 and MCAODC_11505 are separated by 97 nucleotides MCAODC_11505 and MCAODC_11510 are separated by 395 nucleotides MCAODC_11510 and MCAODC_11515 are separated by 75 nucleotides MCAODC_11515 and tra8 are separated by 35 nucleotides
MCAODC_11500: MCAODC_11500 - hypothetical protein, at 2,290,690 to 2,291,088
_11500
MCAODC_11505: MCAODC_11505 - hypothetical protein, at 2,291,186 to 2,291,599
_11505
MCAODC_11510: MCAODC_11510 - Procyclic acidic repetitive protein (PARP), at 2,291,995 to 2,293,245
_11510
MCAODC_11515: MCAODC_11515 - SmpA-OmlA domain-containing protein, at 2,293,321 to 2,293,623
_11515
MCAODC_11520: tra8 - IS30 family transposase, at 2,293,659 to 2,294,414
tra8
Position (kb)
2291
2292
2293
2294 Strain fitness (log2 ratio)
-2
-1
0
1 at 2291.058 kb on + strand at 2291.080 kb on + strand at 2291.204 kb on - strand at 2291.401 kb on + strand, within MCAODC_11505 at 2291.446 kb on + strand, within MCAODC_11505 at 2291.458 kb on - strand, within MCAODC_11505 at 2291.718 kb on + strand at 2291.734 kb on - strand at 2292.012 kb on + strand at 2292.447 kb on - strand, within MCAODC_11510 at 2292.843 kb on - strand, within MCAODC_11510 at 2292.892 kb on + strand, within MCAODC_11510 at 2292.892 kb on + strand, within MCAODC_11510 at 2293.002 kb on + strand, within MCAODC_11510 at 2293.197 kb on + strand at 2293.269 kb on + strand at 2293.273 kb on + strand at 2293.274 kb on - strand at 2293.318 kb on + strand at 2293.319 kb on - strand at 2293.360 kb on - strand, within MCAODC_11515 at 2293.367 kb on + strand, within MCAODC_11515 at 2293.367 kb on + strand, within MCAODC_11515 at 2293.367 kb on + strand, within MCAODC_11515 at 2293.367 kb on + strand, within MCAODC_11515 at 2293.368 kb on - strand, within MCAODC_11515 at 2293.368 kb on - strand, within MCAODC_11515 at 2293.368 kb on - strand, within MCAODC_11515 at 2293.410 kb on + strand, within MCAODC_11515 at 2293.411 kb on - strand, within MCAODC_11515 at 2293.482 kb on + strand, within MCAODC_11515 at 2293.482 kb on + strand, within MCAODC_11515 at 2293.483 kb on - strand, within MCAODC_11515 at 2293.483 kb on - strand, within MCAODC_11515 at 2293.484 kb on + strand, within MCAODC_11515 at 2293.484 kb on + strand, within MCAODC_11515 at 2293.485 kb on - strand, within MCAODC_11515 at 2293.485 kb on - strand, within MCAODC_11515 at 2293.485 kb on - strand, within MCAODC_11515 at 2293.485 kb on - strand, within MCAODC_11515 at 2293.485 kb on - strand, within MCAODC_11515 at 2293.488 kb on + strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.489 kb on - strand, within MCAODC_11515 at 2293.493 kb on + strand, within MCAODC_11515 at 2293.493 kb on + strand, within MCAODC_11515 at 2293.493 kb on + strand, within MCAODC_11515 at 2293.493 kb on + strand, within MCAODC_11515 at 2293.494 kb on - strand, within MCAODC_11515 at 2293.552 kb on + strand, within MCAODC_11515 at 2293.552 kb on + strand, within MCAODC_11515 at 2293.553 kb on - strand, within MCAODC_11515 at 2293.675 kb on - strand at 2293.675 kb on - strand at 2293.675 kb on - strand at 2293.677 kb on - strand at 2293.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 2,291,058 + +0.8 2,291,080 + -2.0 2,291,204 - +0.6 2,291,401 + MCAODC_11505 0.52 +0.8 2,291,446 + MCAODC_11505 0.63 +0.4 2,291,458 - MCAODC_11505 0.66 +1.2 2,291,718 + +0.5 2,291,734 - -0.9 2,292,012 + -1.4 2,292,447 - MCAODC_11510 0.36 -0.8 2,292,843 - MCAODC_11510 0.68 -1.3 2,292,892 + MCAODC_11510 0.72 +0.5 2,292,892 + MCAODC_11510 0.72 -0.5 2,293,002 + MCAODC_11510 0.80 -0.5 2,293,197 + -2.3 2,293,269 + +0.5 2,293,273 + -0.2 2,293,274 - -0.8 2,293,318 + -1.2 2,293,319 - -0.3 2,293,360 - MCAODC_11515 0.13 +1.0 2,293,367 + MCAODC_11515 0.15 -0.2 2,293,367 + MCAODC_11515 0.15 +0.4 2,293,367 + MCAODC_11515 0.15 -0.1 2,293,367 + MCAODC_11515 0.15 -1.6 2,293,368 - MCAODC_11515 0.16 -0.2 2,293,368 - MCAODC_11515 0.16 +0.2 2,293,368 - MCAODC_11515 0.16 -0.2 2,293,410 + MCAODC_11515 0.29 +0.0 2,293,411 - MCAODC_11515 0.30 +1.1 2,293,482 + MCAODC_11515 0.53 -0.4 2,293,482 + MCAODC_11515 0.53 +0.1 2,293,483 - MCAODC_11515 0.53 +0.1 2,293,483 - MCAODC_11515 0.53 +0.3 2,293,484 + MCAODC_11515 0.54 +0.2 2,293,484 + MCAODC_11515 0.54 -0.6 2,293,485 - MCAODC_11515 0.54 +1.7 2,293,485 - MCAODC_11515 0.54 -1.6 2,293,485 - MCAODC_11515 0.54 -1.2 2,293,485 - MCAODC_11515 0.54 -0.5 2,293,485 - MCAODC_11515 0.54 +0.2 2,293,488 + MCAODC_11515 0.55 -0.8 2,293,489 - MCAODC_11515 0.55 -0.7 2,293,489 - MCAODC_11515 0.55 -0.1 2,293,489 - MCAODC_11515 0.55 +0.1 2,293,489 - MCAODC_11515 0.55 +0.3 2,293,489 - MCAODC_11515 0.55 +0.9 2,293,489 - MCAODC_11515 0.55 +1.2 2,293,489 - MCAODC_11515 0.55 +0.0 2,293,493 + MCAODC_11515 0.57 +1.1 2,293,493 + MCAODC_11515 0.57 +0.7 2,293,493 + MCAODC_11515 0.57 +0.1 2,293,493 + MCAODC_11515 0.57 -1.6 2,293,494 - MCAODC_11515 0.57 +1.5 2,293,552 + MCAODC_11515 0.76 +0.8 2,293,552 + MCAODC_11515 0.76 +0.1 2,293,553 - MCAODC_11515 0.77 -1.0 2,293,675 - -0.5 2,293,675 - +0.6 2,293,675 - -0.2 2,293,677 - -0.8 2,293,677 - +0.2
Or see this region's nucleotide sequence