Strain Fitness in Escherichia coli ECRC101 around MCAODC_11510

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_11500 and MCAODC_11505 are separated by 97 nucleotidesMCAODC_11505 and MCAODC_11510 are separated by 395 nucleotidesMCAODC_11510 and MCAODC_11515 are separated by 75 nucleotidesMCAODC_11515 and tra8 are separated by 35 nucleotides MCAODC_11500: MCAODC_11500 - hypothetical protein, at 2,290,690 to 2,291,088 _11500 MCAODC_11505: MCAODC_11505 - hypothetical protein, at 2,291,186 to 2,291,599 _11505 MCAODC_11510: MCAODC_11510 - Procyclic acidic repetitive protein (PARP), at 2,291,995 to 2,293,245 _11510 MCAODC_11515: MCAODC_11515 - SmpA-OmlA domain-containing protein, at 2,293,321 to 2,293,623 _11515 MCAODC_11520: tra8 - IS30 family transposase, at 2,293,659 to 2,294,414 tra8 Position (kb) 2291 2292 2293 2294Strain fitness (log2 ratio) -2 -1 0 1at 2291.058 kb on + strandat 2291.080 kb on + strandat 2291.204 kb on - strandat 2291.401 kb on + strand, within MCAODC_11505at 2291.446 kb on + strand, within MCAODC_11505at 2291.458 kb on - strand, within MCAODC_11505at 2291.718 kb on + strandat 2291.734 kb on - strandat 2292.012 kb on + strandat 2292.447 kb on - strand, within MCAODC_11510at 2292.843 kb on - strand, within MCAODC_11510at 2292.892 kb on + strand, within MCAODC_11510at 2292.892 kb on + strand, within MCAODC_11510at 2293.002 kb on + strand, within MCAODC_11510at 2293.197 kb on + strandat 2293.269 kb on + strandat 2293.273 kb on + strandat 2293.274 kb on - strandat 2293.318 kb on + strandat 2293.319 kb on - strandat 2293.360 kb on - strand, within MCAODC_11515at 2293.367 kb on + strand, within MCAODC_11515at 2293.367 kb on + strand, within MCAODC_11515at 2293.367 kb on + strand, within MCAODC_11515at 2293.367 kb on + strand, within MCAODC_11515at 2293.368 kb on - strand, within MCAODC_11515at 2293.368 kb on - strand, within MCAODC_11515at 2293.368 kb on - strand, within MCAODC_11515at 2293.410 kb on + strand, within MCAODC_11515at 2293.411 kb on - strand, within MCAODC_11515at 2293.482 kb on + strand, within MCAODC_11515at 2293.482 kb on + strand, within MCAODC_11515at 2293.483 kb on - strand, within MCAODC_11515at 2293.483 kb on - strand, within MCAODC_11515at 2293.484 kb on + strand, within MCAODC_11515at 2293.484 kb on + strand, within MCAODC_11515at 2293.485 kb on - strand, within MCAODC_11515at 2293.485 kb on - strand, within MCAODC_11515at 2293.485 kb on - strand, within MCAODC_11515at 2293.485 kb on - strand, within MCAODC_11515at 2293.485 kb on - strand, within MCAODC_11515at 2293.488 kb on + strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.489 kb on - strand, within MCAODC_11515at 2293.493 kb on + strand, within MCAODC_11515at 2293.493 kb on + strand, within MCAODC_11515at 2293.493 kb on + strand, within MCAODC_11515at 2293.493 kb on + strand, within MCAODC_11515at 2293.494 kb on - strand, within MCAODC_11515at 2293.552 kb on + strand, within MCAODC_11515at 2293.552 kb on + strand, within MCAODC_11515at 2293.553 kb on - strand, within MCAODC_11515at 2293.675 kb on - strandat 2293.675 kb on - strandat 2293.675 kb on - strandat 2293.677 kb on - strandat 2293.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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2,291,058 + +0.8
2,291,080 + -2.0
2,291,204 - +0.6
2,291,401 + MCAODC_11505 0.52 +0.8
2,291,446 + MCAODC_11505 0.63 +0.4
2,291,458 - MCAODC_11505 0.66 +1.2
2,291,718 + +0.5
2,291,734 - -0.9
2,292,012 + -1.4
2,292,447 - MCAODC_11510 0.36 -0.8
2,292,843 - MCAODC_11510 0.68 -1.3
2,292,892 + MCAODC_11510 0.72 +0.5
2,292,892 + MCAODC_11510 0.72 -0.5
2,293,002 + MCAODC_11510 0.80 -0.5
2,293,197 + -2.3
2,293,269 + +0.5
2,293,273 + -0.2
2,293,274 - -0.8
2,293,318 + -1.2
2,293,319 - -0.3
2,293,360 - MCAODC_11515 0.13 +1.0
2,293,367 + MCAODC_11515 0.15 -0.2
2,293,367 + MCAODC_11515 0.15 +0.4
2,293,367 + MCAODC_11515 0.15 -0.1
2,293,367 + MCAODC_11515 0.15 -1.6
2,293,368 - MCAODC_11515 0.16 -0.2
2,293,368 - MCAODC_11515 0.16 +0.2
2,293,368 - MCAODC_11515 0.16 -0.2
2,293,410 + MCAODC_11515 0.29 +0.0
2,293,411 - MCAODC_11515 0.30 +1.1
2,293,482 + MCAODC_11515 0.53 -0.4
2,293,482 + MCAODC_11515 0.53 +0.1
2,293,483 - MCAODC_11515 0.53 +0.1
2,293,483 - MCAODC_11515 0.53 +0.3
2,293,484 + MCAODC_11515 0.54 +0.2
2,293,484 + MCAODC_11515 0.54 -0.6
2,293,485 - MCAODC_11515 0.54 +1.7
2,293,485 - MCAODC_11515 0.54 -1.6
2,293,485 - MCAODC_11515 0.54 -1.2
2,293,485 - MCAODC_11515 0.54 -0.5
2,293,485 - MCAODC_11515 0.54 +0.2
2,293,488 + MCAODC_11515 0.55 -0.8
2,293,489 - MCAODC_11515 0.55 -0.7
2,293,489 - MCAODC_11515 0.55 -0.1
2,293,489 - MCAODC_11515 0.55 +0.1
2,293,489 - MCAODC_11515 0.55 +0.3
2,293,489 - MCAODC_11515 0.55 +0.9
2,293,489 - MCAODC_11515 0.55 +1.2
2,293,489 - MCAODC_11515 0.55 +0.0
2,293,493 + MCAODC_11515 0.57 +1.1
2,293,493 + MCAODC_11515 0.57 +0.7
2,293,493 + MCAODC_11515 0.57 +0.1
2,293,493 + MCAODC_11515 0.57 -1.6
2,293,494 - MCAODC_11515 0.57 +1.5
2,293,552 + MCAODC_11515 0.76 +0.8
2,293,552 + MCAODC_11515 0.76 +0.1
2,293,553 - MCAODC_11515 0.77 -1.0
2,293,675 - -0.5
2,293,675 - +0.6
2,293,675 - -0.2
2,293,677 - -0.8
2,293,677 - +0.2

Or see this region's nucleotide sequence