Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhaB and rhaA overlap by 4 nucleotides rhaA and rhaD are separated by 174 nucleotides
MCAODC_04395: rhaB - rhamnulokinase, at 888,744 to 890,213
rhaB
MCAODC_04400: rhaA - L-rhamnose isomerase, at 890,210 to 891,469
rhaA
MCAODC_04410: rhaD - rhamnulose-1-phosphate aldolase, at 891,644 to 892,468
rhaD
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 889.269 kb on + strand, within rhaB at 889.271 kb on + strand, within rhaB at 889.271 kb on + strand, within rhaB at 889.271 kb on + strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.504 kb on - strand, within rhaB at 889.504 kb on - strand, within rhaB at 889.504 kb on - strand, within rhaB at 889.557 kb on - strand, within rhaB at 889.557 kb on - strand, within rhaB at 889.632 kb on - strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.698 kb on - strand, within rhaB at 889.737 kb on - strand, within rhaB at 889.760 kb on + strand, within rhaB at 889.878 kb on + strand, within rhaB at 889.879 kb on - strand, within rhaB at 889.879 kb on - strand, within rhaB at 889.937 kb on + strand, within rhaB at 889.937 kb on + strand, within rhaB at 889.978 kb on + strand, within rhaB at 889.978 kb on + strand, within rhaB at 889.978 kb on + strand, within rhaB at 889.979 kb on - strand, within rhaB at 889.979 kb on - strand, within rhaB at 889.979 kb on - strand, within rhaB at 890.057 kb on - strand, within rhaB at 890.132 kb on + strand at 890.133 kb on - strand at 890.133 kb on - strand at 890.138 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.164 kb on - strand at 890.164 kb on - strand at 890.164 kb on - strand at 890.164 kb on - strand at 890.184 kb on - strand at 890.266 kb on - strand at 890.392 kb on + strand, within rhaA at 890.434 kb on - strand, within rhaA at 890.434 kb on - strand, within rhaA at 890.434 kb on - strand, within rhaA at 890.456 kb on - strand, within rhaA at 890.490 kb on + strand, within rhaA at 890.491 kb on - strand, within rhaA at 890.491 kb on - strand, within rhaA at 890.501 kb on + strand, within rhaA at 890.501 kb on + strand, within rhaA at 890.502 kb on - strand, within rhaA at 890.645 kb on - strand, within rhaA at 890.786 kb on - strand, within rhaA at 890.872 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.919 kb on - strand, within rhaA at 890.942 kb on + strand, within rhaA at 890.942 kb on + strand, within rhaA at 890.943 kb on - strand, within rhaA at 890.951 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.045 kb on - strand, within rhaA at 891.045 kb on - strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.103 kb on - strand, within rhaA at 891.103 kb on - strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.203 kb on - strand, within rhaA at 891.211 kb on + strand, within rhaA at 891.211 kb on + strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.232 kb on + strand, within rhaA at 891.233 kb on - strand, within rhaA at 891.277 kb on + strand, within rhaA at 891.380 kb on + strand at 891.380 kb on + strand at 891.381 kb on - strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.506 kb on + strand at 891.519 kb on + strand at 891.519 kb on + strand at 891.519 kb on + strand at 891.520 kb on - strand at 891.520 kb on - strand at 891.526 kb on - strand at 891.807 kb on - strand, within rhaD at 891.809 kb on - strand, within rhaD at 891.853 kb on + strand, within rhaD at 891.853 kb on + strand, within rhaD at 891.907 kb on + strand, within rhaD at 891.908 kb on - strand, within rhaD at 891.908 kb on - strand, within rhaD at 891.912 kb on + strand, within rhaD at 891.912 kb on + strand, within rhaD at 891.913 kb on - strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.953 kb on - strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.101 kb on + strand, within rhaD at 892.101 kb on + strand, within rhaD at 892.101 kb on + strand, within rhaD at 892.102 kb on - strand, within rhaD at 892.102 kb on - strand, within rhaD at 892.167 kb on + strand, within rhaD at 892.168 kb on - strand, within rhaD at 892.356 kb on + strand, within rhaD at 892.368 kb on - strand, within rhaD at 892.368 kb on - strand, within rhaD at 892.393 kb on + strand at 892.393 kb on + strand at 892.394 kb on - strand at 892.466 kb on + strand at 892.467 kb on - strand at 892.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 889,269 + rhaB MCAODC_04395 0.36 -1.5 889,271 + rhaB MCAODC_04395 0.36 +0.1 889,271 + rhaB MCAODC_04395 0.36 +1.1 889,271 + rhaB MCAODC_04395 0.36 -0.8 889,272 - rhaB MCAODC_04395 0.36 -1.4 889,272 - rhaB MCAODC_04395 0.36 -0.6 889,272 - rhaB MCAODC_04395 0.36 -0.2 889,272 - rhaB MCAODC_04395 0.36 -1.0 889,272 - rhaB MCAODC_04395 0.36 -1.9 889,272 - rhaB MCAODC_04395 0.36 -0.9 889,272 - rhaB MCAODC_04395 0.36 -1.7 889,393 + rhaB MCAODC_04395 0.44 +0.6 889,393 + rhaB MCAODC_04395 0.44 +0.7 889,393 + rhaB MCAODC_04395 0.44 +1.8 889,393 + rhaB MCAODC_04395 0.44 +0.8 889,393 + rhaB MCAODC_04395 0.44 +0.8 889,394 - rhaB MCAODC_04395 0.44 +1.7 889,394 - rhaB MCAODC_04395 0.44 +0.6 889,394 - rhaB MCAODC_04395 0.44 -0.7 889,503 + rhaB MCAODC_04395 0.52 -0.8 889,503 + rhaB MCAODC_04395 0.52 +2.8 889,503 + rhaB MCAODC_04395 0.52 +0.2 889,503 + rhaB MCAODC_04395 0.52 +0.0 889,503 + rhaB MCAODC_04395 0.52 +0.9 889,504 - rhaB MCAODC_04395 0.52 +0.3 889,504 - rhaB MCAODC_04395 0.52 +0.2 889,504 - rhaB MCAODC_04395 0.52 +0.0 889,557 - rhaB MCAODC_04395 0.55 -0.2 889,557 - rhaB MCAODC_04395 0.55 +0.3 889,632 - rhaB MCAODC_04395 0.60 +0.3 889,642 + rhaB MCAODC_04395 0.61 +0.0 889,642 + rhaB MCAODC_04395 0.61 +0.2 889,642 + rhaB MCAODC_04395 0.61 +1.7 889,642 + rhaB MCAODC_04395 0.61 -0.4 889,697 + rhaB MCAODC_04395 0.65 +0.1 889,697 + rhaB MCAODC_04395 0.65 -1.1 889,697 + rhaB MCAODC_04395 0.65 -0.2 889,697 + rhaB MCAODC_04395 0.65 +0.1 889,697 + rhaB MCAODC_04395 0.65 +0.8 889,698 - rhaB MCAODC_04395 0.65 +0.4 889,737 - rhaB MCAODC_04395 0.68 -0.4 889,760 + rhaB MCAODC_04395 0.69 -0.0 889,878 + rhaB MCAODC_04395 0.77 -0.6 889,879 - rhaB MCAODC_04395 0.77 +0.7 889,879 - rhaB MCAODC_04395 0.77 +1.4 889,937 + rhaB MCAODC_04395 0.81 +0.1 889,937 + rhaB MCAODC_04395 0.81 +0.9 889,978 + rhaB MCAODC_04395 0.84 -0.3 889,978 + rhaB MCAODC_04395 0.84 -1.5 889,978 + rhaB MCAODC_04395 0.84 +0.5 889,979 - rhaB MCAODC_04395 0.84 +0.7 889,979 - rhaB MCAODC_04395 0.84 +0.1 889,979 - rhaB MCAODC_04395 0.84 +0.3 890,057 - rhaB MCAODC_04395 0.89 +0.1 890,132 + +0.6 890,133 - -0.3 890,133 - -1.2 890,138 + -0.1 890,163 + +0.2 890,163 + -0.2 890,163 + +0.7 890,163 + -0.9 890,163 + +0.1 890,163 + +0.7 890,164 - -0.2 890,164 - -0.8 890,164 - -1.4 890,164 - -0.1 890,184 - -0.7 890,266 - +0.7 890,392 + rhaA MCAODC_04400 0.14 -0.1 890,434 - rhaA MCAODC_04400 0.18 +1.5 890,434 - rhaA MCAODC_04400 0.18 -0.4 890,434 - rhaA MCAODC_04400 0.18 +1.6 890,456 - rhaA MCAODC_04400 0.20 +0.1 890,490 + rhaA MCAODC_04400 0.22 -0.2 890,491 - rhaA MCAODC_04400 0.22 -0.1 890,491 - rhaA MCAODC_04400 0.22 +3.2 890,501 + rhaA MCAODC_04400 0.23 -0.4 890,501 + rhaA MCAODC_04400 0.23 +0.1 890,502 - rhaA MCAODC_04400 0.23 -0.5 890,645 - rhaA MCAODC_04400 0.35 +0.8 890,786 - rhaA MCAODC_04400 0.46 -0.4 890,872 + rhaA MCAODC_04400 0.53 +2.2 890,918 + rhaA MCAODC_04400 0.56 +0.1 890,918 + rhaA MCAODC_04400 0.56 +0.8 890,918 + rhaA MCAODC_04400 0.56 -2.5 890,919 - rhaA MCAODC_04400 0.56 +1.7 890,942 + rhaA MCAODC_04400 0.58 +0.4 890,942 + rhaA MCAODC_04400 0.58 +0.3 890,943 - rhaA MCAODC_04400 0.58 +1.1 890,951 + rhaA MCAODC_04400 0.59 +0.4 891,044 + rhaA MCAODC_04400 0.66 +1.5 891,044 + rhaA MCAODC_04400 0.66 +0.4 891,044 + rhaA MCAODC_04400 0.66 +0.9 891,044 + rhaA MCAODC_04400 0.66 +0.3 891,044 + rhaA MCAODC_04400 0.66 -0.8 891,045 - rhaA MCAODC_04400 0.66 -1.0 891,045 - rhaA MCAODC_04400 0.66 +1.8 891,102 + rhaA MCAODC_04400 0.71 +3.1 891,102 + rhaA MCAODC_04400 0.71 +0.5 891,102 + rhaA MCAODC_04400 0.71 -0.1 891,102 + rhaA MCAODC_04400 0.71 -0.2 891,103 - rhaA MCAODC_04400 0.71 +0.2 891,103 - rhaA MCAODC_04400 0.71 -0.0 891,202 + rhaA MCAODC_04400 0.79 +0.4 891,202 + rhaA MCAODC_04400 0.79 -0.7 891,202 + rhaA MCAODC_04400 0.79 +0.4 891,203 - rhaA MCAODC_04400 0.79 -1.2 891,211 + rhaA MCAODC_04400 0.79 +1.6 891,211 + rhaA MCAODC_04400 0.79 +0.4 891,212 - rhaA MCAODC_04400 0.80 +1.9 891,212 - rhaA MCAODC_04400 0.80 +1.3 891,212 - rhaA MCAODC_04400 0.80 -0.1 891,232 + rhaA MCAODC_04400 0.81 +0.7 891,233 - rhaA MCAODC_04400 0.81 -0.1 891,277 + rhaA MCAODC_04400 0.85 -0.3 891,380 + -1.0 891,380 + +2.2 891,381 - +0.2 891,437 + +0.3 891,437 + +0.1 891,437 + -0.9 891,437 + -1.2 891,437 + +0.8 891,437 + -1.3 891,437 + -0.1 891,437 + -1.4 891,437 + -0.2 891,506 + -0.6 891,519 + +0.4 891,519 + -1.8 891,519 + +0.4 891,520 - -0.4 891,520 - +0.3 891,526 - +0.2 891,807 - rhaD MCAODC_04410 0.20 +0.0 891,809 - rhaD MCAODC_04410 0.20 +0.1 891,853 + rhaD MCAODC_04410 0.25 -0.1 891,853 + rhaD MCAODC_04410 0.25 -0.1 891,907 + rhaD MCAODC_04410 0.32 +0.9 891,908 - rhaD MCAODC_04410 0.32 -0.2 891,908 - rhaD MCAODC_04410 0.32 -0.0 891,912 + rhaD MCAODC_04410 0.32 -2.8 891,912 + rhaD MCAODC_04410 0.32 +0.9 891,913 - rhaD MCAODC_04410 0.33 -0.3 891,952 + rhaD MCAODC_04410 0.37 +0.5 891,952 + rhaD MCAODC_04410 0.37 +0.1 891,952 + rhaD MCAODC_04410 0.37 +0.8 891,952 + rhaD MCAODC_04410 0.37 -0.4 891,953 - rhaD MCAODC_04410 0.37 -0.5 892,097 + rhaD MCAODC_04410 0.55 -0.6 892,097 + rhaD MCAODC_04410 0.55 -0.8 892,097 + rhaD MCAODC_04410 0.55 -0.4 892,097 + rhaD MCAODC_04410 0.55 +0.8 892,097 + rhaD MCAODC_04410 0.55 +0.6 892,097 + rhaD MCAODC_04410 0.55 -0.8 892,097 + rhaD MCAODC_04410 0.55 +0.3 892,097 + rhaD MCAODC_04410 0.55 -0.3 892,097 + rhaD MCAODC_04410 0.55 -1.2 892,097 + rhaD MCAODC_04410 0.55 -0.4 892,097 + rhaD MCAODC_04410 0.55 -0.8 892,098 - rhaD MCAODC_04410 0.55 +0.7 892,098 - rhaD MCAODC_04410 0.55 +0.3 892,098 - rhaD MCAODC_04410 0.55 +0.6 892,098 - rhaD MCAODC_04410 0.55 +2.7 892,098 - rhaD MCAODC_04410 0.55 -1.4 892,098 - rhaD MCAODC_04410 0.55 -0.3 892,098 - rhaD MCAODC_04410 0.55 +0.5 892,098 - rhaD MCAODC_04410 0.55 -0.8 892,098 - rhaD MCAODC_04410 0.55 -0.3 892,098 - rhaD MCAODC_04410 0.55 -0.3 892,098 - rhaD MCAODC_04410 0.55 -0.9 892,098 - rhaD MCAODC_04410 0.55 -0.2 892,098 - rhaD MCAODC_04410 0.55 -1.5 892,101 + rhaD MCAODC_04410 0.55 -0.4 892,101 + rhaD MCAODC_04410 0.55 -0.8 892,101 + rhaD MCAODC_04410 0.55 +0.2 892,102 - rhaD MCAODC_04410 0.56 +0.1 892,102 - rhaD MCAODC_04410 0.56 -0.0 892,167 + rhaD MCAODC_04410 0.63 -0.7 892,168 - rhaD MCAODC_04410 0.64 -0.3 892,356 + rhaD MCAODC_04410 0.86 +0.9 892,368 - rhaD MCAODC_04410 0.88 -0.7 892,368 - rhaD MCAODC_04410 0.88 -0.5 892,393 + -1.7 892,393 + -0.3 892,394 - -0.0 892,466 + -0.6 892,467 - -0.3 892,467 - +1.3
Or see this region's nucleotide sequence