Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt htpG and recR are separated by 109 nucleotides recR and ybaB overlap by 1 nucleotides ybaB and dnaX are separated by 52 nucleotides
MCAODC_27375: htpG - molecular chaperone HtpG, at 2,217,593 to 2,219,467
htpG
MCAODC_27380: recR - recombination mediator RecR, at 2,219,577 to 2,220,182
recR
MCAODC_27385: ybaB - YbaB/EbfC family nucleoid-associated protein, at 2,220,182 to 2,220,511
ybaB
MCAODC_27390: dnaX - DNA polymerase III subunit gamma/tau, at 2,220,564 to 2,222,495
dnaX
Position (kb)
2220
2221 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2219.362 kb on + strand at 2219.362 kb on + strand at 2219.363 kb on - strand at 2219.469 kb on + strand at 2219.469 kb on + strand at 2219.469 kb on + strand at 2219.470 kb on - strand at 2219.484 kb on - strand at 2219.494 kb on + strand at 2219.592 kb on - strand at 2219.692 kb on + strand, within recR at 2219.693 kb on - strand, within recR at 2219.693 kb on - strand, within recR at 2219.716 kb on + strand, within recR at 2219.716 kb on + strand, within recR at 2219.716 kb on + strand, within recR at 2219.716 kb on + strand, within recR at 2219.716 kb on + strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.717 kb on - strand, within recR at 2219.720 kb on + strand, within recR at 2219.727 kb on - strand, within recR at 2219.727 kb on - strand, within recR at 2219.906 kb on - strand, within recR at 2220.101 kb on + strand, within recR at 2220.152 kb on + strand at 2220.362 kb on - strand, within ybaB at 2220.387 kb on - strand, within ybaB at 2220.549 kb on - strand at 2220.549 kb on - strand at 2220.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 2,219,362 + +0.5 2,219,362 + +0.5 2,219,363 - +1.2 2,219,469 + -0.0 2,219,469 + +0.2 2,219,469 + -1.0 2,219,470 - -0.4 2,219,484 - +0.1 2,219,494 + +0.2 2,219,592 - -1.9 2,219,692 + recR MCAODC_27380 0.19 -0.1 2,219,693 - recR MCAODC_27380 0.19 -0.1 2,219,693 - recR MCAODC_27380 0.19 +0.2 2,219,716 + recR MCAODC_27380 0.23 +1.5 2,219,716 + recR MCAODC_27380 0.23 +0.0 2,219,716 + recR MCAODC_27380 0.23 -0.4 2,219,716 + recR MCAODC_27380 0.23 -0.3 2,219,716 + recR MCAODC_27380 0.23 -0.5 2,219,717 - recR MCAODC_27380 0.23 -0.1 2,219,717 - recR MCAODC_27380 0.23 -1.2 2,219,717 - recR MCAODC_27380 0.23 -3.3 2,219,717 - recR MCAODC_27380 0.23 -1.3 2,219,717 - recR MCAODC_27380 0.23 -0.1 2,219,717 - recR MCAODC_27380 0.23 -1.6 2,219,717 - recR MCAODC_27380 0.23 +1.2 2,219,717 - recR MCAODC_27380 0.23 -0.7 2,219,720 + recR MCAODC_27380 0.24 +1.9 2,219,727 - recR MCAODC_27380 0.25 +1.2 2,219,727 - recR MCAODC_27380 0.25 -1.1 2,219,906 - recR MCAODC_27380 0.54 -0.4 2,220,101 + recR MCAODC_27380 0.86 +0.3 2,220,152 + -1.9 2,220,362 - ybaB MCAODC_27385 0.55 -2.5 2,220,387 - ybaB MCAODC_27385 0.62 -3.4 2,220,549 - +1.3 2,220,549 - -0.6 2,220,549 - -0.1
Or see this region's nucleotide sequence