Strain Fitness in Escherichia coli ECRC101 around MCAODC_27385

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthtpG and recR are separated by 109 nucleotidesrecR and ybaB overlap by 1 nucleotidesybaB and dnaX are separated by 52 nucleotides MCAODC_27375: htpG - molecular chaperone HtpG, at 2,217,593 to 2,219,467 htpG MCAODC_27380: recR - recombination mediator RecR, at 2,219,577 to 2,220,182 recR MCAODC_27385: ybaB - YbaB/EbfC family nucleoid-associated protein, at 2,220,182 to 2,220,511 ybaB MCAODC_27390: dnaX - DNA polymerase III subunit gamma/tau, at 2,220,564 to 2,222,495 dnaX Position (kb) 2220 2221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2219.362 kb on + strandat 2219.362 kb on + strandat 2219.363 kb on - strandat 2219.469 kb on + strandat 2219.469 kb on + strandat 2219.469 kb on + strandat 2219.470 kb on - strandat 2219.484 kb on - strandat 2219.494 kb on + strandat 2219.592 kb on - strandat 2219.692 kb on + strand, within recRat 2219.693 kb on - strand, within recRat 2219.693 kb on - strand, within recRat 2219.716 kb on + strand, within recRat 2219.716 kb on + strand, within recRat 2219.716 kb on + strand, within recRat 2219.716 kb on + strand, within recRat 2219.716 kb on + strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.717 kb on - strand, within recRat 2219.720 kb on + strand, within recRat 2219.727 kb on - strand, within recRat 2219.727 kb on - strand, within recRat 2219.906 kb on - strand, within recRat 2220.101 kb on + strand, within recRat 2220.152 kb on + strandat 2220.362 kb on - strand, within ybaBat 2220.387 kb on - strand, within ybaBat 2220.549 kb on - strandat 2220.549 kb on - strandat 2220.549 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,219,362 + +0.5
2,219,362 + +0.5
2,219,363 - +1.2
2,219,469 + -0.0
2,219,469 + +0.2
2,219,469 + -1.0
2,219,470 - -0.4
2,219,484 - +0.1
2,219,494 + +0.2
2,219,592 - -1.9
2,219,692 + recR MCAODC_27380 0.19 -0.1
2,219,693 - recR MCAODC_27380 0.19 -0.1
2,219,693 - recR MCAODC_27380 0.19 +0.2
2,219,716 + recR MCAODC_27380 0.23 +1.5
2,219,716 + recR MCAODC_27380 0.23 +0.0
2,219,716 + recR MCAODC_27380 0.23 -0.4
2,219,716 + recR MCAODC_27380 0.23 -0.3
2,219,716 + recR MCAODC_27380 0.23 -0.5
2,219,717 - recR MCAODC_27380 0.23 -0.1
2,219,717 - recR MCAODC_27380 0.23 -1.2
2,219,717 - recR MCAODC_27380 0.23 -3.3
2,219,717 - recR MCAODC_27380 0.23 -1.3
2,219,717 - recR MCAODC_27380 0.23 -0.1
2,219,717 - recR MCAODC_27380 0.23 -1.6
2,219,717 - recR MCAODC_27380 0.23 +1.2
2,219,717 - recR MCAODC_27380 0.23 -0.7
2,219,720 + recR MCAODC_27380 0.24 +1.9
2,219,727 - recR MCAODC_27380 0.25 +1.2
2,219,727 - recR MCAODC_27380 0.25 -1.1
2,219,906 - recR MCAODC_27380 0.54 -0.4
2,220,101 + recR MCAODC_27380 0.86 +0.3
2,220,152 + -1.9
2,220,362 - ybaB MCAODC_27385 0.55 -2.5
2,220,387 - ybaB MCAODC_27385 0.62 -3.4
2,220,549 - +1.3
2,220,549 - -0.6
2,220,549 - -0.1

Or see this region's nucleotide sequence