Strain Fitness in Escherichia coli ECRC101 around MCAODC_23820

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcvT and MCAODC_23810 are separated by 35 nucleotidesMCAODC_23810 and fabA are separated by 21 nucleotidesfabA and fabG are separated by 3 nucleotidesfabG and acpS2 are separated by 13 nucleotidesacpS2 and fhaC are separated by 15 nucleotides MCAODC_23805: gcvT - aminomethyltransferase, at 1,483,126 to 1,484,286 gcvT MCAODC_23810: MCAODC_23810 - acyl carrier protein, at 1,484,322 to 1,484,603 _23810 MCAODC_23815: fabA - beta-hydroxyacyl-ACP dehydratase, at 1,484,625 to 1,485,173 fabA MCAODC_23820: fabG - 3-oxoacyl-ACP reductase, at 1,485,177 to 1,485,938 fabG MCAODC_23825: acpS2 - putative holo-[acyl-carrier-protein] synthase 2, at 1,485,952 to 1,486,320 acpS2 MCAODC_23830: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,486,336 to 1,487,955 fhaC Position (kb) 1485 1486Strain fitness (log2 ratio) -3 -2 -1 0 1at 1484.186 kb on + strandat 1484.197 kb on - strandat 1484.233 kb on - strandat 1484.234 kb on + strandat 1484.235 kb on - strandat 1484.237 kb on - strandat 1484.416 kb on - strand, within MCAODC_23810at 1484.490 kb on - strand, within MCAODC_23810at 1484.570 kb on + strand, within MCAODC_23810at 1484.626 kb on + strandat 1484.627 kb on - strandat 1484.684 kb on - strand, within fabAat 1484.750 kb on + strand, within fabAat 1484.751 kb on - strand, within fabAat 1484.880 kb on + strand, within fabAat 1484.881 kb on - strand, within fabAat 1484.948 kb on - strand, within fabAat 1484.948 kb on - strand, within fabAat 1484.948 kb on - strand, within fabAat 1484.979 kb on - strand, within fabAat 1485.026 kb on - strand, within fabAat 1485.037 kb on + strand, within fabAat 1485.037 kb on + strand, within fabAat 1485.038 kb on - strand, within fabAat 1485.038 kb on - strand, within fabAat 1485.164 kb on - strandat 1485.168 kb on - strandat 1485.226 kb on + strandat 1485.227 kb on - strandat 1485.227 kb on - strandat 1485.246 kb on + strandat 1485.247 kb on - strandat 1485.247 kb on - strandat 1485.281 kb on + strand, within fabGat 1485.282 kb on - strand, within fabGat 1485.336 kb on + strand, within fabGat 1485.435 kb on + strand, within fabGat 1485.497 kb on + strand, within fabGat 1485.657 kb on - strand, within fabGat 1486.236 kb on - strand, within acpS2at 1486.506 kb on - strand, within fhaCat 1486.739 kb on + strand, within fhaC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,484,186 + -0.3
1,484,197 - +0.0
1,484,233 - -3.4
1,484,234 + +0.5
1,484,235 - -1.9
1,484,237 - -0.2
1,484,416 - MCAODC_23810 0.33 +1.0
1,484,490 - MCAODC_23810 0.60 -3.2
1,484,570 + MCAODC_23810 0.88 +0.4
1,484,626 + +0.8
1,484,627 - +0.6
1,484,684 - fabA MCAODC_23815 0.11 -0.6
1,484,750 + fabA MCAODC_23815 0.23 -2.6
1,484,751 - fabA MCAODC_23815 0.23 -2.0
1,484,880 + fabA MCAODC_23815 0.46 -1.8
1,484,881 - fabA MCAODC_23815 0.47 -0.1
1,484,948 - fabA MCAODC_23815 0.59 -0.3
1,484,948 - fabA MCAODC_23815 0.59 -1.7
1,484,948 - fabA MCAODC_23815 0.59 -0.0
1,484,979 - fabA MCAODC_23815 0.64 +0.8
1,485,026 - fabA MCAODC_23815 0.73 -0.4
1,485,037 + fabA MCAODC_23815 0.75 -0.1
1,485,037 + fabA MCAODC_23815 0.75 +0.4
1,485,038 - fabA MCAODC_23815 0.75 -0.3
1,485,038 - fabA MCAODC_23815 0.75 +0.3
1,485,164 - +1.4
1,485,168 - +0.7
1,485,226 + -0.6
1,485,227 - -0.8
1,485,227 - -1.0
1,485,246 + +0.6
1,485,247 - -1.4
1,485,247 - +0.2
1,485,281 + fabG MCAODC_23820 0.14 -0.8
1,485,282 - fabG MCAODC_23820 0.14 +0.5
1,485,336 + fabG MCAODC_23820 0.21 -1.5
1,485,435 + fabG MCAODC_23820 0.34 -1.5
1,485,497 + fabG MCAODC_23820 0.42 -3.7
1,485,657 - fabG MCAODC_23820 0.63 -0.0
1,486,236 - acpS2 MCAODC_23825 0.77 -0.5
1,486,506 - fhaC MCAODC_23830 0.10 -1.5
1,486,739 + fhaC MCAODC_23830 0.25 -1.9

Or see this region's nucleotide sequence