Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lolD and MCAODC_23790 are separated by 10 nucleotides MCAODC_23790 and fabB overlap by 4 nucleotides fabB and fabB are separated by 4 nucleotides
MCAODC_23785: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 1,477,598 to 1,478,305
lolD
MCAODC_23790: MCAODC_23790 - ATP-binding protein, at 1,478,316 to 1,479,269
_23790
MCAODC_23795: fabB - beta-ketoacyl synthase, at 1,479,266 to 1,480,489
fabB
MCAODC_23800: fabB - beta-ketoacyl-ACP synthase, at 1,480,494 to 1,483,052
fabB
Position (kb)
1479
1480
1481 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1478.345 kb on - strand at 1478.573 kb on - strand, within MCAODC_23790 at 1478.763 kb on + strand, within MCAODC_23790 at 1478.780 kb on - strand, within MCAODC_23790 at 1478.865 kb on - strand, within MCAODC_23790 at 1478.960 kb on + strand, within MCAODC_23790 at 1478.961 kb on - strand, within MCAODC_23790 at 1479.015 kb on + strand, within MCAODC_23790 at 1479.016 kb on - strand, within MCAODC_23790 at 1479.016 kb on - strand, within MCAODC_23790 at 1479.059 kb on + strand, within MCAODC_23790 at 1479.059 kb on + strand, within MCAODC_23790 at 1479.060 kb on - strand, within MCAODC_23790 at 1479.060 kb on - strand, within MCAODC_23790 at 1479.061 kb on + strand, within MCAODC_23790 at 1479.062 kb on - strand, within MCAODC_23790 at 1479.062 kb on - strand, within MCAODC_23790 at 1479.091 kb on + strand, within MCAODC_23790 at 1479.092 kb on - strand, within MCAODC_23790 at 1479.095 kb on + strand, within MCAODC_23790 at 1479.148 kb on + strand, within MCAODC_23790 at 1479.149 kb on - strand, within MCAODC_23790 at 1479.163 kb on + strand, within MCAODC_23790 at 1479.163 kb on + strand, within MCAODC_23790 at 1479.164 kb on - strand, within MCAODC_23790 at 1479.164 kb on - strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.167 kb on + strand, within MCAODC_23790 at 1479.168 kb on - strand, within MCAODC_23790 at 1479.250 kb on + strand at 1479.250 kb on + strand at 1479.251 kb on - strand at 1479.311 kb on - strand at 1479.358 kb on + strand at 1479.382 kb on + strand at 1479.383 kb on - strand at 1479.387 kb on - strand at 1479.387 kb on - strand at 1479.503 kb on - strand, within fabB at 1479.686 kb on - strand, within fabB at 1479.812 kb on - strand, within fabB at 1480.047 kb on + strand, within fabB at 1480.146 kb on + strand, within fabB at 1480.203 kb on + strand, within fabB at 1480.352 kb on - strand, within fabB at 1480.384 kb on + strand at 1480.384 kb on + strand at 1480.385 kb on - strand at 1480.472 kb on - strand at 1480.472 kb on - strand at 1480.520 kb on - strand at 1480.520 kb on - strand at 1480.585 kb on - strand at 1480.636 kb on - strand at 1480.649 kb on + strand at 1480.650 kb on - strand at 1480.766 kb on - strand, within fabB at 1480.821 kb on + strand, within fabB at 1480.822 kb on - strand, within fabB at 1480.822 kb on - strand, within fabB at 1480.822 kb on - strand, within fabB at 1480.822 kb on - strand, within fabB at 1480.860 kb on - strand, within fabB at 1480.925 kb on - strand, within fabB at 1480.925 kb on - strand, within fabB at 1480.928 kb on + strand, within fabB at 1480.929 kb on - strand, within fabB at 1481.041 kb on + strand, within fabB at 1481.042 kb on - strand, within fabB at 1481.062 kb on + strand, within fabB at 1481.063 kb on - strand, within fabB at 1481.071 kb on + strand, within fabB at 1481.120 kb on + strand, within fabB at 1481.120 kb on + strand, within fabB at 1481.121 kb on - strand, within fabB at 1481.121 kb on - strand, within fabB at 1481.122 kb on + strand, within fabB at 1481.122 kb on + strand, within fabB at 1481.123 kb on - strand, within fabB at 1481.144 kb on - strand, within fabB at 1481.144 kb on - strand, within fabB at 1481.144 kb on - strand, within fabB at 1481.166 kb on + strand, within fabB at 1481.206 kb on + strand, within fabB at 1481.255 kb on + strand, within fabB at 1481.258 kb on - strand, within fabB at 1481.331 kb on - strand, within fabB at 1481.368 kb on + strand, within fabB at 1481.374 kb on + strand, within fabB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,478,345 - -0.6 1,478,573 - MCAODC_23790 0.27 -2.1 1,478,763 + MCAODC_23790 0.47 +0.3 1,478,780 - MCAODC_23790 0.49 -0.4 1,478,865 - MCAODC_23790 0.58 -0.6 1,478,960 + MCAODC_23790 0.68 +0.1 1,478,961 - MCAODC_23790 0.68 +0.2 1,479,015 + MCAODC_23790 0.73 +0.8 1,479,016 - MCAODC_23790 0.73 +0.8 1,479,016 - MCAODC_23790 0.73 -2.3 1,479,059 + MCAODC_23790 0.78 +1.6 1,479,059 + MCAODC_23790 0.78 +0.9 1,479,060 - MCAODC_23790 0.78 -0.9 1,479,060 - MCAODC_23790 0.78 -1.5 1,479,061 + MCAODC_23790 0.78 +0.4 1,479,062 - MCAODC_23790 0.78 +0.8 1,479,062 - MCAODC_23790 0.78 -2.1 1,479,091 + MCAODC_23790 0.81 -0.8 1,479,092 - MCAODC_23790 0.81 -1.6 1,479,095 + MCAODC_23790 0.82 -1.0 1,479,148 + MCAODC_23790 0.87 -0.6 1,479,149 - MCAODC_23790 0.87 +2.3 1,479,163 + MCAODC_23790 0.89 -0.8 1,479,163 + MCAODC_23790 0.89 -0.1 1,479,164 - MCAODC_23790 0.89 +1.2 1,479,164 - MCAODC_23790 0.89 +0.1 1,479,167 + MCAODC_23790 0.89 +0.3 1,479,167 + MCAODC_23790 0.89 +0.0 1,479,167 + MCAODC_23790 0.89 +2.3 1,479,167 + MCAODC_23790 0.89 +0.6 1,479,167 + MCAODC_23790 0.89 -0.4 1,479,167 + MCAODC_23790 0.89 -1.7 1,479,167 + MCAODC_23790 0.89 +0.1 1,479,168 - MCAODC_23790 0.89 -0.8 1,479,250 + +1.7 1,479,250 + +1.9 1,479,251 - +1.4 1,479,311 - -2.4 1,479,358 + -3.4 1,479,382 + -0.1 1,479,383 - +0.5 1,479,387 - +1.1 1,479,387 - +1.2 1,479,503 - fabB MCAODC_23795 0.19 -0.6 1,479,686 - fabB MCAODC_23795 0.34 +0.2 1,479,812 - fabB MCAODC_23795 0.45 -0.3 1,480,047 + fabB MCAODC_23795 0.64 -0.9 1,480,146 + fabB MCAODC_23795 0.72 -1.2 1,480,203 + fabB MCAODC_23795 0.77 -0.2 1,480,352 - fabB MCAODC_23795 0.89 -0.7 1,480,384 + -0.6 1,480,384 + -0.7 1,480,385 - -0.6 1,480,472 - +2.9 1,480,472 - +0.9 1,480,520 - -0.3 1,480,520 - -2.8 1,480,585 - -3.0 1,480,636 - +0.3 1,480,649 + +2.4 1,480,650 - -0.1 1,480,766 - fabB MCAODC_23800 0.11 -0.9 1,480,821 + fabB MCAODC_23800 0.13 -2.1 1,480,822 - fabB MCAODC_23800 0.13 +2.2 1,480,822 - fabB MCAODC_23800 0.13 -0.6 1,480,822 - fabB MCAODC_23800 0.13 +0.5 1,480,822 - fabB MCAODC_23800 0.13 -0.0 1,480,860 - fabB MCAODC_23800 0.14 -0.2 1,480,925 - fabB MCAODC_23800 0.17 +0.2 1,480,925 - fabB MCAODC_23800 0.17 -2.0 1,480,928 + fabB MCAODC_23800 0.17 +0.1 1,480,929 - fabB MCAODC_23800 0.17 -1.1 1,481,041 + fabB MCAODC_23800 0.21 +0.2 1,481,042 - fabB MCAODC_23800 0.21 -1.0 1,481,062 + fabB MCAODC_23800 0.22 -1.8 1,481,063 - fabB MCAODC_23800 0.22 -0.2 1,481,071 + fabB MCAODC_23800 0.23 -0.0 1,481,120 + fabB MCAODC_23800 0.24 -0.9 1,481,120 + fabB MCAODC_23800 0.24 +2.7 1,481,121 - fabB MCAODC_23800 0.25 +0.5 1,481,121 - fabB MCAODC_23800 0.25 -0.9 1,481,122 + fabB MCAODC_23800 0.25 -1.3 1,481,122 + fabB MCAODC_23800 0.25 +0.9 1,481,123 - fabB MCAODC_23800 0.25 -1.4 1,481,144 - fabB MCAODC_23800 0.25 -1.4 1,481,144 - fabB MCAODC_23800 0.25 +1.9 1,481,144 - fabB MCAODC_23800 0.25 -0.3 1,481,166 + fabB MCAODC_23800 0.26 +0.6 1,481,206 + fabB MCAODC_23800 0.28 +0.6 1,481,255 + fabB MCAODC_23800 0.30 +1.5 1,481,258 - fabB MCAODC_23800 0.30 +0.2 1,481,331 - fabB MCAODC_23800 0.33 +0.3 1,481,368 + fabB MCAODC_23800 0.34 +1.1 1,481,374 + fabB MCAODC_23800 0.34 +0.8
Or see this region's nucleotide sequence