Strain Fitness in Escherichia coli ECRC101 around MCAODC_23795

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlolD and MCAODC_23790 are separated by 10 nucleotidesMCAODC_23790 and fabB overlap by 4 nucleotidesfabB and fabB are separated by 4 nucleotides MCAODC_23785: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 1,477,598 to 1,478,305 lolD MCAODC_23790: MCAODC_23790 - ATP-binding protein, at 1,478,316 to 1,479,269 _23790 MCAODC_23795: fabB - beta-ketoacyl synthase, at 1,479,266 to 1,480,489 fabB MCAODC_23800: fabB - beta-ketoacyl-ACP synthase, at 1,480,494 to 1,483,052 fabB Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1478.345 kb on - strandat 1478.573 kb on - strand, within MCAODC_23790at 1478.763 kb on + strand, within MCAODC_23790at 1478.780 kb on - strand, within MCAODC_23790at 1478.865 kb on - strand, within MCAODC_23790at 1478.960 kb on + strand, within MCAODC_23790at 1478.961 kb on - strand, within MCAODC_23790at 1479.015 kb on + strand, within MCAODC_23790at 1479.016 kb on - strand, within MCAODC_23790at 1479.016 kb on - strand, within MCAODC_23790at 1479.059 kb on + strand, within MCAODC_23790at 1479.059 kb on + strand, within MCAODC_23790at 1479.060 kb on - strand, within MCAODC_23790at 1479.060 kb on - strand, within MCAODC_23790at 1479.061 kb on + strand, within MCAODC_23790at 1479.062 kb on - strand, within MCAODC_23790at 1479.062 kb on - strand, within MCAODC_23790at 1479.091 kb on + strand, within MCAODC_23790at 1479.092 kb on - strand, within MCAODC_23790at 1479.095 kb on + strand, within MCAODC_23790at 1479.148 kb on + strand, within MCAODC_23790at 1479.149 kb on - strand, within MCAODC_23790at 1479.163 kb on + strand, within MCAODC_23790at 1479.163 kb on + strand, within MCAODC_23790at 1479.164 kb on - strand, within MCAODC_23790at 1479.164 kb on - strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.167 kb on + strand, within MCAODC_23790at 1479.168 kb on - strand, within MCAODC_23790at 1479.250 kb on + strandat 1479.250 kb on + strandat 1479.251 kb on - strandat 1479.311 kb on - strandat 1479.358 kb on + strandat 1479.382 kb on + strandat 1479.383 kb on - strandat 1479.387 kb on - strandat 1479.387 kb on - strandat 1479.503 kb on - strand, within fabBat 1479.686 kb on - strand, within fabBat 1479.812 kb on - strand, within fabBat 1480.047 kb on + strand, within fabBat 1480.146 kb on + strand, within fabBat 1480.203 kb on + strand, within fabBat 1480.352 kb on - strand, within fabBat 1480.384 kb on + strandat 1480.384 kb on + strandat 1480.385 kb on - strandat 1480.472 kb on - strandat 1480.472 kb on - strandat 1480.520 kb on - strandat 1480.520 kb on - strandat 1480.585 kb on - strandat 1480.636 kb on - strandat 1480.649 kb on + strandat 1480.650 kb on - strandat 1480.766 kb on - strand, within fabBat 1480.821 kb on + strand, within fabBat 1480.822 kb on - strand, within fabBat 1480.822 kb on - strand, within fabBat 1480.822 kb on - strand, within fabBat 1480.822 kb on - strand, within fabBat 1480.860 kb on - strand, within fabBat 1480.925 kb on - strand, within fabBat 1480.925 kb on - strand, within fabBat 1480.928 kb on + strand, within fabBat 1480.929 kb on - strand, within fabBat 1481.041 kb on + strand, within fabBat 1481.042 kb on - strand, within fabBat 1481.062 kb on + strand, within fabBat 1481.063 kb on - strand, within fabBat 1481.071 kb on + strand, within fabBat 1481.120 kb on + strand, within fabBat 1481.120 kb on + strand, within fabBat 1481.121 kb on - strand, within fabBat 1481.121 kb on - strand, within fabBat 1481.122 kb on + strand, within fabBat 1481.122 kb on + strand, within fabBat 1481.123 kb on - strand, within fabBat 1481.144 kb on - strand, within fabBat 1481.144 kb on - strand, within fabBat 1481.144 kb on - strand, within fabBat 1481.166 kb on + strand, within fabBat 1481.206 kb on + strand, within fabBat 1481.255 kb on + strand, within fabBat 1481.258 kb on - strand, within fabBat 1481.331 kb on - strand, within fabBat 1481.368 kb on + strand, within fabBat 1481.374 kb on + strand, within fabB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,478,345 - -0.6
1,478,573 - MCAODC_23790 0.27 -2.1
1,478,763 + MCAODC_23790 0.47 +0.3
1,478,780 - MCAODC_23790 0.49 -0.4
1,478,865 - MCAODC_23790 0.58 -0.6
1,478,960 + MCAODC_23790 0.68 +0.1
1,478,961 - MCAODC_23790 0.68 +0.2
1,479,015 + MCAODC_23790 0.73 +0.8
1,479,016 - MCAODC_23790 0.73 +0.8
1,479,016 - MCAODC_23790 0.73 -2.3
1,479,059 + MCAODC_23790 0.78 +1.6
1,479,059 + MCAODC_23790 0.78 +0.9
1,479,060 - MCAODC_23790 0.78 -0.9
1,479,060 - MCAODC_23790 0.78 -1.5
1,479,061 + MCAODC_23790 0.78 +0.4
1,479,062 - MCAODC_23790 0.78 +0.8
1,479,062 - MCAODC_23790 0.78 -2.1
1,479,091 + MCAODC_23790 0.81 -0.8
1,479,092 - MCAODC_23790 0.81 -1.6
1,479,095 + MCAODC_23790 0.82 -1.0
1,479,148 + MCAODC_23790 0.87 -0.6
1,479,149 - MCAODC_23790 0.87 +2.3
1,479,163 + MCAODC_23790 0.89 -0.8
1,479,163 + MCAODC_23790 0.89 -0.1
1,479,164 - MCAODC_23790 0.89 +1.2
1,479,164 - MCAODC_23790 0.89 +0.1
1,479,167 + MCAODC_23790 0.89 +0.3
1,479,167 + MCAODC_23790 0.89 +0.0
1,479,167 + MCAODC_23790 0.89 +2.3
1,479,167 + MCAODC_23790 0.89 +0.6
1,479,167 + MCAODC_23790 0.89 -0.4
1,479,167 + MCAODC_23790 0.89 -1.7
1,479,167 + MCAODC_23790 0.89 +0.1
1,479,168 - MCAODC_23790 0.89 -0.8
1,479,250 + +1.7
1,479,250 + +1.9
1,479,251 - +1.4
1,479,311 - -2.4
1,479,358 + -3.4
1,479,382 + -0.1
1,479,383 - +0.5
1,479,387 - +1.1
1,479,387 - +1.2
1,479,503 - fabB MCAODC_23795 0.19 -0.6
1,479,686 - fabB MCAODC_23795 0.34 +0.2
1,479,812 - fabB MCAODC_23795 0.45 -0.3
1,480,047 + fabB MCAODC_23795 0.64 -0.9
1,480,146 + fabB MCAODC_23795 0.72 -1.2
1,480,203 + fabB MCAODC_23795 0.77 -0.2
1,480,352 - fabB MCAODC_23795 0.89 -0.7
1,480,384 + -0.6
1,480,384 + -0.7
1,480,385 - -0.6
1,480,472 - +2.9
1,480,472 - +0.9
1,480,520 - -0.3
1,480,520 - -2.8
1,480,585 - -3.0
1,480,636 - +0.3
1,480,649 + +2.4
1,480,650 - -0.1
1,480,766 - fabB MCAODC_23800 0.11 -0.9
1,480,821 + fabB MCAODC_23800 0.13 -2.1
1,480,822 - fabB MCAODC_23800 0.13 +2.2
1,480,822 - fabB MCAODC_23800 0.13 -0.6
1,480,822 - fabB MCAODC_23800 0.13 +0.5
1,480,822 - fabB MCAODC_23800 0.13 -0.0
1,480,860 - fabB MCAODC_23800 0.14 -0.2
1,480,925 - fabB MCAODC_23800 0.17 +0.2
1,480,925 - fabB MCAODC_23800 0.17 -2.0
1,480,928 + fabB MCAODC_23800 0.17 +0.1
1,480,929 - fabB MCAODC_23800 0.17 -1.1
1,481,041 + fabB MCAODC_23800 0.21 +0.2
1,481,042 - fabB MCAODC_23800 0.21 -1.0
1,481,062 + fabB MCAODC_23800 0.22 -1.8
1,481,063 - fabB MCAODC_23800 0.22 -0.2
1,481,071 + fabB MCAODC_23800 0.23 -0.0
1,481,120 + fabB MCAODC_23800 0.24 -0.9
1,481,120 + fabB MCAODC_23800 0.24 +2.7
1,481,121 - fabB MCAODC_23800 0.25 +0.5
1,481,121 - fabB MCAODC_23800 0.25 -0.9
1,481,122 + fabB MCAODC_23800 0.25 -1.3
1,481,122 + fabB MCAODC_23800 0.25 +0.9
1,481,123 - fabB MCAODC_23800 0.25 -1.4
1,481,144 - fabB MCAODC_23800 0.25 -1.4
1,481,144 - fabB MCAODC_23800 0.25 +1.9
1,481,144 - fabB MCAODC_23800 0.25 -0.3
1,481,166 + fabB MCAODC_23800 0.26 +0.6
1,481,206 + fabB MCAODC_23800 0.28 +0.6
1,481,255 + fabB MCAODC_23800 0.30 +1.5
1,481,258 - fabB MCAODC_23800 0.30 +0.2
1,481,331 - fabB MCAODC_23800 0.33 +0.3
1,481,368 + fabB MCAODC_23800 0.34 +1.1
1,481,374 + fabB MCAODC_23800 0.34 +0.8

Or see this region's nucleotide sequence