Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and MCAODC_22490 are separated by 161 nucleotides MCAODC_22490 and MCAODC_22495 overlap by 76 nucleotides MCAODC_22495 and espN are separated by 168 nucleotides
MCAODC_22485: tnp-IS3 - IS3 family transposase, at 1,255,872 to 1,256,033
tnp-IS3
MCAODC_22490: MCAODC_22490 - IS3 family transposase, at 1,256,195 to 1,257,100
_22490
MCAODC_22495: MCAODC_22495 - CP4-44 prophage putative disrupted hemin or colicin receptor, at 1,257,025 to 1,257,474
_22495
MCAODC_22500: espN - type III secretion system effector EspN, at 1,257,643 to 1,261,044
espN
Position (kb)
1257
1258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1256.031 kb on + strand at 1256.031 kb on + strand at 1256.235 kb on + strand at 1256.241 kb on + strand at 1256.241 kb on + strand at 1256.241 kb on + strand at 1256.280 kb on - strand at 1256.280 kb on - strand at 1256.341 kb on + strand, within MCAODC_22490 at 1256.341 kb on + strand, within MCAODC_22490 at 1256.361 kb on + strand, within MCAODC_22490 at 1256.362 kb on - strand, within MCAODC_22490 at 1256.390 kb on + strand, within MCAODC_22490 at 1256.390 kb on + strand, within MCAODC_22490 at 1256.391 kb on - strand, within MCAODC_22490 at 1256.443 kb on + strand, within MCAODC_22490 at 1256.520 kb on + strand, within MCAODC_22490 at 1256.542 kb on + strand, within MCAODC_22490 at 1256.542 kb on + strand, within MCAODC_22490 at 1256.543 kb on - strand, within MCAODC_22490 at 1256.890 kb on - strand, within MCAODC_22490 at 1257.064 kb on + strand at 1257.407 kb on - strand, within MCAODC_22495 at 1257.500 kb on - strand at 1257.510 kb on + strand at 1257.553 kb on - strand at 1257.628 kb on + strand at 1257.628 kb on + strand at 1258.136 kb on - strand, within espN at 1258.198 kb on + strand, within espN at 1258.206 kb on + strand, within espN
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,256,031 + -1.0 1,256,031 + +2.3 1,256,235 + +0.9 1,256,241 + +0.8 1,256,241 + +1.4 1,256,241 + -0.2 1,256,280 - -0.6 1,256,280 - +1.2 1,256,341 + MCAODC_22490 0.16 -2.5 1,256,341 + MCAODC_22490 0.16 +1.6 1,256,361 + MCAODC_22490 0.18 +2.1 1,256,362 - MCAODC_22490 0.18 -0.8 1,256,390 + MCAODC_22490 0.22 +0.5 1,256,390 + MCAODC_22490 0.22 +0.3 1,256,391 - MCAODC_22490 0.22 +0.6 1,256,443 + MCAODC_22490 0.27 +0.3 1,256,520 + MCAODC_22490 0.36 +0.3 1,256,542 + MCAODC_22490 0.38 +0.9 1,256,542 + MCAODC_22490 0.38 +1.4 1,256,543 - MCAODC_22490 0.38 +2.2 1,256,890 - MCAODC_22490 0.77 +0.2 1,257,064 + -3.5 1,257,407 - MCAODC_22495 0.85 -0.9 1,257,500 - -2.1 1,257,510 + -0.7 1,257,553 - -1.4 1,257,628 + -0.4 1,257,628 + -0.9 1,258,136 - espN MCAODC_22500 0.14 +0.5 1,258,198 + espN MCAODC_22500 0.16 +0.2 1,258,206 + espN MCAODC_22500 0.17 -0.5
Or see this region's nucleotide sequence