Strain Fitness in Escherichia coli ECRC101 around MCAODC_22495

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and MCAODC_22490 are separated by 161 nucleotidesMCAODC_22490 and MCAODC_22495 overlap by 76 nucleotidesMCAODC_22495 and espN are separated by 168 nucleotides MCAODC_22485: tnp-IS3 - IS3 family transposase, at 1,255,872 to 1,256,033 tnp-IS3 MCAODC_22490: MCAODC_22490 - IS3 family transposase, at 1,256,195 to 1,257,100 _22490 MCAODC_22495: MCAODC_22495 - CP4-44 prophage putative disrupted hemin or colicin receptor, at 1,257,025 to 1,257,474 _22495 MCAODC_22500: espN - type III secretion system effector EspN, at 1,257,643 to 1,261,044 espN Position (kb) 1257 1258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1256.031 kb on + strandat 1256.031 kb on + strandat 1256.235 kb on + strandat 1256.241 kb on + strandat 1256.241 kb on + strandat 1256.241 kb on + strandat 1256.280 kb on - strandat 1256.280 kb on - strandat 1256.341 kb on + strand, within MCAODC_22490at 1256.341 kb on + strand, within MCAODC_22490at 1256.361 kb on + strand, within MCAODC_22490at 1256.362 kb on - strand, within MCAODC_22490at 1256.390 kb on + strand, within MCAODC_22490at 1256.390 kb on + strand, within MCAODC_22490at 1256.391 kb on - strand, within MCAODC_22490at 1256.443 kb on + strand, within MCAODC_22490at 1256.520 kb on + strand, within MCAODC_22490at 1256.542 kb on + strand, within MCAODC_22490at 1256.542 kb on + strand, within MCAODC_22490at 1256.543 kb on - strand, within MCAODC_22490at 1256.890 kb on - strand, within MCAODC_22490at 1257.064 kb on + strandat 1257.407 kb on - strand, within MCAODC_22495at 1257.500 kb on - strandat 1257.510 kb on + strandat 1257.553 kb on - strandat 1257.628 kb on + strandat 1257.628 kb on + strandat 1258.136 kb on - strand, within espNat 1258.198 kb on + strand, within espNat 1258.206 kb on + strand, within espN

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,256,031 + -1.0
1,256,031 + +2.3
1,256,235 + +0.9
1,256,241 + +0.8
1,256,241 + +1.4
1,256,241 + -0.2
1,256,280 - -0.6
1,256,280 - +1.2
1,256,341 + MCAODC_22490 0.16 -2.5
1,256,341 + MCAODC_22490 0.16 +1.6
1,256,361 + MCAODC_22490 0.18 +2.1
1,256,362 - MCAODC_22490 0.18 -0.8
1,256,390 + MCAODC_22490 0.22 +0.5
1,256,390 + MCAODC_22490 0.22 +0.3
1,256,391 - MCAODC_22490 0.22 +0.6
1,256,443 + MCAODC_22490 0.27 +0.3
1,256,520 + MCAODC_22490 0.36 +0.3
1,256,542 + MCAODC_22490 0.38 +0.9
1,256,542 + MCAODC_22490 0.38 +1.4
1,256,543 - MCAODC_22490 0.38 +2.2
1,256,890 - MCAODC_22490 0.77 +0.2
1,257,064 + -3.5
1,257,407 - MCAODC_22495 0.85 -0.9
1,257,500 - -2.1
1,257,510 + -0.7
1,257,553 - -1.4
1,257,628 + -0.4
1,257,628 + -0.9
1,258,136 - espN MCAODC_22500 0.14 +0.5
1,258,198 + espN MCAODC_22500 0.16 +0.2
1,258,206 + espN MCAODC_22500 0.17 -0.5

Or see this region's nucleotide sequence