Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ychH and pth are separated by 277 nucleotides pth and ychF are separated by 116 nucleotides ychF and MCAODC_21855 are separated by 843 nucleotides
MCAODC_21840: ychH - stress-induced protein YchH, at 1,150,903 to 1,151,181
ychH
MCAODC_21845: pth - aminoacyl-tRNA hydrolase, at 1,151,459 to 1,152,043
pth
MCAODC_21850: ychF - redox-regulated ATPase YchF, at 1,152,160 to 1,153,251
ychF
MCAODC_21855: MCAODC_21855 - Outer membrane autotransporter, at 1,154,095 to 1,155,255
_21855
Position (kb)
1152
1153
1154 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1151.182 kb on - strand at 1151.182 kb on - strand at 1151.220 kb on - strand at 1151.233 kb on - strand at 1151.239 kb on - strand at 1151.243 kb on + strand at 1151.244 kb on - strand at 1151.245 kb on + strand at 1151.265 kb on - strand at 1151.433 kb on + strand at 1151.433 kb on + strand at 1151.437 kb on + strand at 1151.989 kb on + strand at 1152.080 kb on + strand at 1152.688 kb on - strand, within ychF at 1153.307 kb on + strand at 1153.308 kb on - strand at 1153.363 kb on - strand at 1153.371 kb on - strand at 1153.414 kb on - strand at 1153.441 kb on - strand at 1153.528 kb on - strand at 1153.549 kb on - strand at 1153.560 kb on - strand at 1153.563 kb on - strand at 1153.573 kb on + strand at 1153.595 kb on + strand at 1153.596 kb on - strand at 1153.639 kb on + strand at 1153.649 kb on - strand at 1153.649 kb on - strand at 1153.747 kb on - strand at 1153.865 kb on - strand at 1154.025 kb on + strand at 1154.028 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.084 kb on - strand at 1154.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,151,182 - -1.7 1,151,182 - -2.7 1,151,220 - +1.2 1,151,233 - -0.6 1,151,239 - -1.9 1,151,243 + +0.6 1,151,244 - -1.8 1,151,245 + +0.4 1,151,265 - +0.5 1,151,433 + +1.6 1,151,433 + -1.5 1,151,437 + +2.3 1,151,989 + +0.6 1,152,080 + +0.7 1,152,688 - ychF MCAODC_21850 0.48 -1.8 1,153,307 + -0.8 1,153,308 - +0.4 1,153,363 - +1.6 1,153,371 - -4.3 1,153,414 - -0.3 1,153,441 - +0.7 1,153,528 - -2.9 1,153,549 - +0.4 1,153,560 - +0.2 1,153,563 - +0.1 1,153,573 + -1.3 1,153,595 + -1.3 1,153,596 - +0.5 1,153,639 + +1.6 1,153,649 - -1.1 1,153,649 - +0.0 1,153,747 - +0.1 1,153,865 - -0.5 1,154,025 + +1.8 1,154,028 + -1.1 1,154,081 + -1.7 1,154,081 + -0.6 1,154,081 + -0.4 1,154,084 - +0.8 1,154,147 + +1.0
Or see this region's nucleotide sequence