Strain Fitness in Escherichia coli ECRC101 around MCAODC_21850

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntychH and pth are separated by 277 nucleotidespth and ychF are separated by 116 nucleotidesychF and MCAODC_21855 are separated by 843 nucleotides MCAODC_21840: ychH - stress-induced protein YchH, at 1,150,903 to 1,151,181 ychH MCAODC_21845: pth - aminoacyl-tRNA hydrolase, at 1,151,459 to 1,152,043 pth MCAODC_21850: ychF - redox-regulated ATPase YchF, at 1,152,160 to 1,153,251 ychF MCAODC_21855: MCAODC_21855 - Outer membrane autotransporter, at 1,154,095 to 1,155,255 _21855 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1151.182 kb on - strandat 1151.182 kb on - strandat 1151.220 kb on - strandat 1151.233 kb on - strandat 1151.239 kb on - strandat 1151.243 kb on + strandat 1151.244 kb on - strandat 1151.245 kb on + strandat 1151.265 kb on - strandat 1151.433 kb on + strandat 1151.433 kb on + strandat 1151.437 kb on + strandat 1151.989 kb on + strandat 1152.080 kb on + strandat 1152.688 kb on - strand, within ychFat 1153.307 kb on + strandat 1153.308 kb on - strandat 1153.363 kb on - strandat 1153.371 kb on - strandat 1153.414 kb on - strandat 1153.441 kb on - strandat 1153.528 kb on - strandat 1153.549 kb on - strandat 1153.560 kb on - strandat 1153.563 kb on - strandat 1153.573 kb on + strandat 1153.595 kb on + strandat 1153.596 kb on - strandat 1153.639 kb on + strandat 1153.649 kb on - strandat 1153.649 kb on - strandat 1153.747 kb on - strandat 1153.865 kb on - strandat 1154.025 kb on + strandat 1154.028 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.084 kb on - strandat 1154.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,151,182 - -1.7
1,151,182 - -2.7
1,151,220 - +1.2
1,151,233 - -0.6
1,151,239 - -1.9
1,151,243 + +0.6
1,151,244 - -1.8
1,151,245 + +0.4
1,151,265 - +0.5
1,151,433 + +1.6
1,151,433 + -1.5
1,151,437 + +2.3
1,151,989 + +0.6
1,152,080 + +0.7
1,152,688 - ychF MCAODC_21850 0.48 -1.8
1,153,307 + -0.8
1,153,308 - +0.4
1,153,363 - +1.6
1,153,371 - -4.3
1,153,414 - -0.3
1,153,441 - +0.7
1,153,528 - -2.9
1,153,549 - +0.4
1,153,560 - +0.2
1,153,563 - +0.1
1,153,573 + -1.3
1,153,595 + -1.3
1,153,596 - +0.5
1,153,639 + +1.6
1,153,649 - -1.1
1,153,649 - +0.0
1,153,747 - +0.1
1,153,865 - -0.5
1,154,025 + +1.8
1,154,028 + -1.1
1,154,081 + -1.7
1,154,081 + -0.6
1,154,081 + -0.4
1,154,084 - +0.8
1,154,147 + +1.0

Or see this region's nucleotide sequence