Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20935 and MCAODC_20940 overlap by 1 nucleotides MCAODC_20940 and MCAODC_20945 overlap by 14 nucleotides MCAODC_20945 and MCAODC_20950 are separated by 89 nucleotides
MCAODC_20935: MCAODC_20935 - AAA-23 domain-containing protein, at 992,738 to 994,705
_20935
MCAODC_20940: MCAODC_20940 - ABC-three component (ABC-3C) system Middle Component 4, at 994,705 to 995,217
_20940
MCAODC_20945: MCAODC_20945 - DUF676 domain-containing protein, at 995,204 to 996,427
_20945
MCAODC_20950: MCAODC_20950 - replication protein A, at 996,517 to 998,799
_20950
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 994.325 kb on + strand, within MCAODC_20935 at 994.494 kb on - strand, within MCAODC_20935 at 994.618 kb on + strand at 995.140 kb on + strand, within MCAODC_20940 at 995.402 kb on - strand, within MCAODC_20945 at 995.822 kb on - strand, within MCAODC_20945 at 995.822 kb on - strand, within MCAODC_20945 at 995.849 kb on - strand, within MCAODC_20945 at 996.363 kb on - strand at 996.388 kb on + strand at 996.427 kb on + strand at 996.556 kb on - strand at 996.661 kb on - strand at 996.762 kb on + strand, within MCAODC_20950 at 996.788 kb on - strand, within MCAODC_20950 at 996.788 kb on - strand, within MCAODC_20950 at 996.795 kb on + strand, within MCAODC_20950 at 996.807 kb on + strand, within MCAODC_20950 at 996.829 kb on + strand, within MCAODC_20950 at 996.829 kb on + strand, within MCAODC_20950 at 996.829 kb on + strand, within MCAODC_20950 at 996.829 kb on + strand, within MCAODC_20950 at 996.830 kb on - strand, within MCAODC_20950 at 996.830 kb on - strand, within MCAODC_20950 at 996.845 kb on - strand, within MCAODC_20950 at 996.847 kb on + strand, within MCAODC_20950 at 996.854 kb on - strand, within MCAODC_20950 at 996.927 kb on + strand, within MCAODC_20950 at 996.928 kb on - strand, within MCAODC_20950 at 997.032 kb on + strand, within MCAODC_20950 at 997.033 kb on - strand, within MCAODC_20950 at 997.033 kb on - strand, within MCAODC_20950 at 997.059 kb on - strand, within MCAODC_20950 at 997.177 kb on - strand, within MCAODC_20950 at 997.178 kb on + strand, within MCAODC_20950 at 997.179 kb on - strand, within MCAODC_20950 at 997.274 kb on - strand, within MCAODC_20950
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 994,325 + MCAODC_20935 0.81 -0.4 994,494 - MCAODC_20935 0.89 +1.4 994,618 + +2.4 995,140 + MCAODC_20940 0.85 -0.0 995,402 - MCAODC_20945 0.16 -0.1 995,822 - MCAODC_20945 0.50 -1.6 995,822 - MCAODC_20945 0.50 -0.9 995,849 - MCAODC_20945 0.53 -0.3 996,363 - +1.0 996,388 + +0.1 996,427 + +0.4 996,556 - -0.8 996,661 - +0.1 996,762 + MCAODC_20950 0.11 -0.9 996,788 - MCAODC_20950 0.12 -0.5 996,788 - MCAODC_20950 0.12 +0.7 996,795 + MCAODC_20950 0.12 -0.9 996,807 + MCAODC_20950 0.13 -0.2 996,829 + MCAODC_20950 0.14 +1.6 996,829 + MCAODC_20950 0.14 +1.8 996,829 + MCAODC_20950 0.14 -1.6 996,829 + MCAODC_20950 0.14 +0.6 996,830 - MCAODC_20950 0.14 +0.9 996,830 - MCAODC_20950 0.14 -0.5 996,845 - MCAODC_20950 0.14 -0.9 996,847 + MCAODC_20950 0.14 +1.0 996,854 - MCAODC_20950 0.15 -2.6 996,927 + MCAODC_20950 0.18 -0.4 996,928 - MCAODC_20950 0.18 +1.0 997,032 + MCAODC_20950 0.23 +1.7 997,033 - MCAODC_20950 0.23 -1.7 997,033 - MCAODC_20950 0.23 -0.9 997,059 - MCAODC_20950 0.24 +0.1 997,177 - MCAODC_20950 0.29 -2.7 997,178 + MCAODC_20950 0.29 -0.7 997,179 - MCAODC_20950 0.29 +0.7 997,274 - MCAODC_20950 0.33 -0.1
Or see this region's nucleotide sequence