Strain Fitness in Escherichia coli ECRC101 around MCAODC_18440

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcelF and chbR are separated by 104 nucleotideschbR and chbA are separated by 10 nucleotideschbA and chbC are separated by 50 nucleotides MCAODC_18430: celF - 6-phospho-beta-glucosidase, at 545,927 to 547,279 celF MCAODC_18435: chbR - transcriptional regulator ChbR, at 547,384 to 548,223 chbR MCAODC_18440: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 548,234 to 548,584 chbA MCAODC_18445: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 548,635 to 549,993 chbC Position (kb) 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 547.234 kb on - strandat 547.253 kb on - strandat 547.699 kb on - strand, within chbRat 548.137 kb on - strand, within chbRat 548.236 kb on - strandat 548.479 kb on - strand, within chbAat 548.513 kb on - strand, within chbAat 548.584 kb on + strandat 548.584 kb on + strandat 548.585 kb on - strandat 548.794 kb on - strand, within chbCat 548.794 kb on - strand, within chbCat 548.836 kb on - strand, within chbCat 548.864 kb on + strand, within chbCat 548.865 kb on - strand, within chbCat 548.865 kb on - strand, within chbCat 548.867 kb on + strand, within chbCat 548.868 kb on - strand, within chbCat 548.903 kb on - strand, within chbCat 548.941 kb on - strand, within chbCat 549.285 kb on - strand, within chbCat 549.498 kb on + strand, within chbC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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547,234 - -0.5
547,253 - +2.1
547,699 - chbR MCAODC_18435 0.38 -1.9
548,137 - chbR MCAODC_18435 0.90 +1.0
548,236 - -2.4
548,479 - chbA MCAODC_18440 0.70 -1.7
548,513 - chbA MCAODC_18440 0.79 -0.8
548,584 + +0.1
548,584 + +0.2
548,585 - -0.8
548,794 - chbC MCAODC_18445 0.12 +0.6
548,794 - chbC MCAODC_18445 0.12 -0.1
548,836 - chbC MCAODC_18445 0.15 -0.0
548,864 + chbC MCAODC_18445 0.17 -1.9
548,865 - chbC MCAODC_18445 0.17 +1.2
548,865 - chbC MCAODC_18445 0.17 -1.2
548,867 + chbC MCAODC_18445 0.17 +0.3
548,868 - chbC MCAODC_18445 0.17 -1.1
548,903 - chbC MCAODC_18445 0.20 -1.1
548,941 - chbC MCAODC_18445 0.23 -0.5
549,285 - chbC MCAODC_18445 0.48 -2.0
549,498 + chbC MCAODC_18445 0.64 +0.2

Or see this region's nucleotide sequence