Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and MCAODC_16730 are separated by 973 nucleotides MCAODC_16730 and MCAODC_16735 are separated by 157 nucleotides
MCAODC_16725: fimA - type 1 fimbrial major subunit FimA, at 251,437 to 252,000
fimA
MCAODC_16730: MCAODC_16730 - Protein HipA, at 252,974 to 253,996
_16730
MCAODC_16735: MCAODC_16735 - Autotransporter domain-containing protein, at 254,154 to 255,554
_16735
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 252.026 kb on - strand at 252.051 kb on - strand at 252.176 kb on - strand at 252.191 kb on - strand at 252.299 kb on - strand at 252.372 kb on - strand at 252.760 kb on - strand at 252.975 kb on + strand at 252.998 kb on + strand at 253.498 kb on - strand, within MCAODC_16730 at 253.534 kb on + strand, within MCAODC_16730 at 253.809 kb on - strand, within MCAODC_16730 at 253.873 kb on + strand, within MCAODC_16730 at 253.913 kb on + strand at 254.149 kb on - strand at 254.163 kb on - strand at 254.164 kb on + strand at 254.165 kb on - strand at 254.197 kb on + strand at 254.212 kb on - strand at 254.212 kb on - strand at 254.212 kb on - strand at 254.277 kb on + strand at 254.375 kb on - strand, within MCAODC_16735 at 254.555 kb on - strand, within MCAODC_16735 at 254.698 kb on + strand, within MCAODC_16735 at 254.699 kb on - strand, within MCAODC_16735 at 254.699 kb on - strand, within MCAODC_16735 at 254.825 kb on + strand, within MCAODC_16735 at 254.922 kb on + strand, within MCAODC_16735 at 254.923 kb on - strand, within MCAODC_16735 at 254.923 kb on - strand, within MCAODC_16735 at 254.923 kb on - strand, within MCAODC_16735
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 252,026 - +0.4 252,051 - -0.7 252,176 - +2.3 252,191 - +2.7 252,299 - -0.9 252,372 - +0.5 252,760 - +1.7 252,975 + +0.4 252,998 + -0.2 253,498 - MCAODC_16730 0.51 -0.0 253,534 + MCAODC_16730 0.55 -2.0 253,809 - MCAODC_16730 0.82 -1.3 253,873 + MCAODC_16730 0.88 -1.4 253,913 + +0.5 254,149 - +0.6 254,163 - -1.2 254,164 + -0.5 254,165 - -0.6 254,197 + -0.7 254,212 - +0.4 254,212 - +1.6 254,212 - -0.2 254,277 + +1.2 254,375 - MCAODC_16735 0.16 -0.0 254,555 - MCAODC_16735 0.29 +0.3 254,698 + MCAODC_16735 0.39 +1.6 254,699 - MCAODC_16735 0.39 -0.7 254,699 - MCAODC_16735 0.39 +3.0 254,825 + MCAODC_16735 0.48 +0.8 254,922 + MCAODC_16735 0.55 +0.4 254,923 - MCAODC_16735 0.55 -1.3 254,923 - MCAODC_16735 0.55 -0.7 254,923 - MCAODC_16735 0.55 -0.9
Or see this region's nucleotide sequence