Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tolA and tra5 are separated by 538 nucleotides tra5 and MCAODC_15555 are separated by 181 nucleotides
MCAODC_15545: tolA - tolA family protein, at 89,347 to 89,742
tolA
MCAODC_15550: tra5 - Transposase InsO and inactivated derivatives, at 90,281 to 90,640
tra5
MCAODC_15555: MCAODC_15555 - Transposase, at 90,822 to 91,232
_15555
Position (kb) 90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 89.281 kb on - strand at 89.281 kb on - strand at 89.281 kb on - strand at 89.285 kb on - strand at 89.310 kb on + strand at 89.310 kb on + strand at 89.310 kb on + strand at 89.310 kb on + strand at 89.311 kb on - strand at 89.311 kb on - strand at 89.311 kb on - strand at 89.311 kb on - strand at 89.311 kb on - strand at 89.311 kb on - strand at 89.325 kb on + strand at 89.325 kb on + strand at 89.325 kb on + strand at 89.325 kb on + strand at 89.326 kb on - strand at 89.326 kb on - strand at 89.326 kb on - strand at 89.326 kb on - strand at 89.326 kb on - strand at 89.344 kb on + strand at 89.344 kb on + strand at 89.344 kb on + strand at 89.344 kb on + strand at 89.344 kb on + strand at 89.344 kb on + strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.345 kb on - strand at 89.346 kb on + strand at 89.346 kb on + strand at 89.347 kb on - strand at 89.347 kb on - strand at 89.347 kb on - strand at 89.368 kb on - strand at 89.369 kb on + strand at 89.370 kb on - strand at 89.411 kb on + strand, within tolA at 89.411 kb on + strand, within tolA at 89.411 kb on + strand, within tolA at 89.411 kb on + strand, within tolA at 89.411 kb on + strand, within tolA at 89.411 kb on + strand, within tolA at 89.411 kb on + strand, within tolA at 89.412 kb on - strand, within tolA at 89.412 kb on - strand, within tolA at 89.412 kb on - strand, within tolA at 89.412 kb on - strand, within tolA at 89.431 kb on - strand, within tolA at 89.436 kb on + strand, within tolA at 89.437 kb on - strand, within tolA at 89.449 kb on - strand, within tolA at 89.520 kb on + strand, within tolA at 89.520 kb on + strand, within tolA at 89.520 kb on + strand, within tolA at 89.521 kb on - strand, within tolA at 89.527 kb on - strand, within tolA at 89.575 kb on - strand, within tolA at 89.629 kb on - strand, within tolA at 89.635 kb on + strand, within tolA at 89.636 kb on - strand, within tolA at 89.744 kb on + strand at 89.744 kb on + strand at 89.744 kb on + strand at 89.744 kb on + strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.753 kb on + strand at 89.753 kb on + strand at 89.753 kb on + strand at 89.754 kb on - strand at 89.754 kb on - strand at 89.808 kb on - strand at 89.822 kb on + strand at 89.823 kb on - strand at 89.823 kb on - strand at 89.823 kb on - strand at 89.823 kb on - strand at 89.833 kb on - strand at 89.833 kb on - strand at 89.850 kb on + strand at 89.850 kb on + strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.902 kb on + strand at 89.902 kb on + strand at 89.978 kb on - strand at 90.020 kb on - strand at 90.025 kb on + strand at 90.026 kb on - strand at 90.060 kb on + strand at 90.061 kb on - strand at 90.076 kb on + strand at 90.076 kb on + strand at 90.076 kb on + strand at 90.076 kb on + strand at 90.076 kb on + strand at 90.077 kb on - strand at 90.077 kb on - strand at 90.077 kb on - strand at 90.080 kb on + strand at 90.080 kb on + strand at 90.081 kb on - strand at 90.081 kb on - strand at 90.081 kb on - strand at 90.081 kb on - strand at 90.092 kb on + strand at 90.092 kb on + strand at 90.092 kb on + strand at 90.092 kb on + strand at 90.093 kb on - strand at 90.093 kb on - strand at 90.093 kb on - strand at 90.099 kb on - strand at 90.125 kb on - strand at 90.129 kb on + strand at 90.129 kb on + strand at 90.130 kb on - strand at 90.135 kb on - strand at 90.135 kb on - strand at 90.161 kb on + strand at 90.161 kb on + strand at 90.161 kb on + strand at 90.161 kb on + strand at 90.162 kb on - strand at 90.162 kb on - strand at 90.162 kb on - strand at 90.162 kb on - strand at 90.197 kb on + strand at 90.198 kb on - strand at 90.199 kb on + strand at 90.226 kb on + strand at 90.226 kb on + strand at 90.226 kb on + strand at 90.242 kb on - strand at 90.242 kb on - strand at 90.276 kb on - strand at 90.276 kb on - strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.292 kb on + strand at 90.293 kb on - strand at 90.293 kb on - strand at 90.293 kb on - strand at 90.293 kb on - strand at 90.294 kb on + strand at 90.294 kb on + strand at 90.294 kb on + strand at 90.294 kb on + strand at 90.294 kb on + strand at 90.298 kb on + strand at 90.298 kb on + strand at 90.298 kb on + strand at 90.298 kb on + strand at 90.327 kb on + strand, within tra5 at 90.332 kb on + strand, within tra5 at 90.332 kb on + strand, within tra5 at 90.431 kb on + strand, within tra5 at 90.431 kb on + strand, within tra5 at 90.432 kb on - strand, within tra5 at 90.432 kb on - strand, within tra5 at 90.432 kb on - strand, within tra5 at 90.432 kb on - strand, within tra5 at 90.432 kb on - strand, within tra5 at 90.432 kb on - strand, within tra5 at 90.436 kb on - strand, within tra5 at 90.436 kb on - strand, within tra5 at 90.436 kb on - strand, within tra5 at 90.713 kb on + strand at 90.713 kb on + strand at 90.713 kb on + strand at 90.714 kb on - strand at 90.714 kb on - strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.717 kb on + strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.718 kb on - strand at 90.736 kb on + strand at 90.736 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.843 kb on + strand at 90.844 kb on - strand at 90.850 kb on + strand at 90.876 kb on + strand, within MCAODC_15555 at 90.876 kb on + strand, within MCAODC_15555 at 90.876 kb on + strand, within MCAODC_15555 at 90.876 kb on + strand, within MCAODC_15555 at 90.876 kb on + strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.877 kb on - strand, within MCAODC_15555 at 90.878 kb on + strand, within MCAODC_15555 at 90.878 kb on + strand, within MCAODC_15555 at 90.931 kb on - strand, within MCAODC_15555 at 90.940 kb on - strand, within MCAODC_15555 at 90.991 kb on - strand, within MCAODC_15555 at 90.991 kb on - strand, within MCAODC_15555 at 90.991 kb on - strand, within MCAODC_15555 at 90.992 kb on + strand, within MCAODC_15555 at 90.992 kb on + strand, within MCAODC_15555 at 90.993 kb on - strand, within MCAODC_15555 at 91.063 kb on - strand, within MCAODC_15555 at 91.063 kb on - strand, within MCAODC_15555 at 91.064 kb on + strand, within MCAODC_15555 at 91.064 kb on + strand, within MCAODC_15555 at 91.065 kb on - strand, within MCAODC_15555 at 91.121 kb on + strand, within MCAODC_15555 at 91.165 kb on - strand, within MCAODC_15555 at 91.197 kb on - strand at 91.313 kb on + strand at 91.389 kb on + strand at 91.418 kb on - strand at 91.427 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.496 kb on + strand at 91.543 kb on - strand at 91.572 kb on + strand at 91.609 kb on - strand at 91.613 kb on - strand at 91.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 89,281 - +0.0 89,281 - -2.6 89,281 - +0.4 89,285 - -0.1 89,310 + +0.8 89,310 + +0.1 89,310 + +0.3 89,310 + -1.0 89,311 - -1.1 89,311 - -1.3 89,311 - +0.1 89,311 - -0.5 89,311 - -0.4 89,311 - -2.1 89,325 + -1.2 89,325 + -0.1 89,325 + +0.5 89,325 + -0.4 89,326 - +0.4 89,326 - +0.6 89,326 - -1.1 89,326 - -0.5 89,326 - +0.3 89,344 + +1.0 89,344 + -0.2 89,344 + -1.0 89,344 + +0.1 89,344 + +0.3 89,344 + -0.3 89,345 - -0.0 89,345 - +0.3 89,345 - +1.6 89,345 - -0.2 89,345 - +0.6 89,345 - +0.5 89,345 - -0.8 89,345 - +1.0 89,345 - +1.1 89,345 - +0.9 89,345 - +0.5 89,345 - +2.9 89,346 + -1.3 89,346 + +1.8 89,347 - +0.7 89,347 - +1.1 89,347 - +0.5 89,368 - -0.1 89,369 + -0.5 89,370 - -1.2 89,411 + tolA MCAODC_15545 0.16 +0.1 89,411 + tolA MCAODC_15545 0.16 +0.4 89,411 + tolA MCAODC_15545 0.16 +0.2 89,411 + tolA MCAODC_15545 0.16 +0.6 89,411 + tolA MCAODC_15545 0.16 +0.2 89,411 + tolA MCAODC_15545 0.16 +2.6 89,411 + tolA MCAODC_15545 0.16 +1.1 89,412 - tolA MCAODC_15545 0.16 -1.4 89,412 - tolA MCAODC_15545 0.16 -1.4 89,412 - tolA MCAODC_15545 0.16 -0.8 89,412 - tolA MCAODC_15545 0.16 -0.3 89,431 - tolA MCAODC_15545 0.21 +0.1 89,436 + tolA MCAODC_15545 0.22 -0.3 89,437 - tolA MCAODC_15545 0.23 +1.1 89,449 - tolA MCAODC_15545 0.26 +1.7 89,520 + tolA MCAODC_15545 0.44 -0.3 89,520 + tolA MCAODC_15545 0.44 +1.2 89,520 + tolA MCAODC_15545 0.44 -0.9 89,521 - tolA MCAODC_15545 0.44 -0.1 89,527 - tolA MCAODC_15545 0.45 +0.6 89,575 - tolA MCAODC_15545 0.58 +0.3 89,629 - tolA MCAODC_15545 0.71 +0.8 89,635 + tolA MCAODC_15545 0.73 -0.5 89,636 - tolA MCAODC_15545 0.73 -0.9 89,744 + -0.5 89,744 + -2.3 89,744 + -0.4 89,744 + -0.2 89,745 - -2.2 89,745 - -1.6 89,745 - +1.1 89,745 - -1.2 89,745 - -0.2 89,745 - -1.1 89,753 + +0.3 89,753 + +0.3 89,753 + -1.7 89,754 - +1.0 89,754 - -1.0 89,808 - -0.3 89,822 + +0.5 89,823 - -0.5 89,823 - +0.0 89,823 - -0.3 89,823 - -0.8 89,833 - +0.1 89,833 - +0.1 89,850 + -2.1 89,850 + -0.0 89,851 - -2.7 89,851 - +0.4 89,851 - +0.6 89,851 - -0.7 89,851 - -0.6 89,902 + +1.6 89,902 + +0.8 89,978 - +2.6 90,020 - -1.4 90,025 + -0.3 90,026 - -0.4 90,060 + +0.7 90,061 - +0.6 90,076 + -1.4 90,076 + -0.3 90,076 + +1.1 90,076 + -0.3 90,076 + -1.1 90,077 - -0.6 90,077 - +0.3 90,077 - +0.2 90,080 + -1.6 90,080 + -0.3 90,081 - -0.8 90,081 - -0.5 90,081 - +0.7 90,081 - +0.4 90,092 + -0.1 90,092 + -1.2 90,092 + +0.9 90,092 + +0.5 90,093 - -0.7 90,093 - +0.1 90,093 - +1.1 90,099 - -0.6 90,125 - -1.0 90,129 + +0.5 90,129 + -1.9 90,130 - +1.9 90,135 - +1.3 90,135 - -1.1 90,161 + -1.1 90,161 + -0.0 90,161 + -1.4 90,161 + -0.9 90,162 - +1.0 90,162 - +1.4 90,162 - +0.0 90,162 - -1.6 90,197 + +0.8 90,198 - -1.8 90,199 + -0.2 90,226 + -0.7 90,226 + -1.8 90,226 + -2.0 90,242 - +0.2 90,242 - +0.4 90,276 - +0.2 90,276 - +0.9 90,292 + +0.3 90,292 + +0.8 90,292 + +1.5 90,292 + -0.2 90,292 + +1.3 90,292 + -1.6 90,292 + -0.1 90,292 + -1.1 90,292 + -0.9 90,293 - -0.7 90,293 - -1.0 90,293 - +0.5 90,293 - +1.5 90,294 + -0.9 90,294 + -0.1 90,294 + -0.3 90,294 + +1.0 90,294 + +0.7 90,298 + +0.6 90,298 + +0.7 90,298 + +2.9 90,298 + -0.0 90,327 + tra5 MCAODC_15550 0.13 -0.8 90,332 + tra5 MCAODC_15550 0.14 +0.0 90,332 + tra5 MCAODC_15550 0.14 +1.0 90,431 + tra5 MCAODC_15550 0.42 -2.2 90,431 + tra5 MCAODC_15550 0.42 -1.3 90,432 - tra5 MCAODC_15550 0.42 -0.5 90,432 - tra5 MCAODC_15550 0.42 -0.0 90,432 - tra5 MCAODC_15550 0.42 -1.6 90,432 - tra5 MCAODC_15550 0.42 -1.6 90,432 - tra5 MCAODC_15550 0.42 -0.6 90,432 - tra5 MCAODC_15550 0.42 +0.7 90,436 - tra5 MCAODC_15550 0.43 -1.7 90,436 - tra5 MCAODC_15550 0.43 -1.7 90,436 - tra5 MCAODC_15550 0.43 -1.0 90,713 + -0.5 90,713 + +0.3 90,713 + -0.5 90,714 - -0.9 90,714 - -0.7 90,717 + -3.1 90,717 + +1.1 90,717 + -2.7 90,717 + +2.2 90,717 + +0.3 90,717 + -0.4 90,717 + -1.7 90,717 + +0.5 90,718 - -0.4 90,718 - +1.9 90,718 - -0.0 90,718 - -1.3 90,718 - -0.4 90,718 - +0.0 90,718 - +0.2 90,718 - +1.6 90,718 - -0.9 90,718 - -2.2 90,718 - -2.0 90,736 + +0.8 90,736 + +1.0 90,738 + +0.4 90,738 + -0.2 90,738 + -2.7 90,738 + -0.6 90,739 - +0.7 90,739 - -2.1 90,843 + +0.0 90,844 - +3.2 90,850 + -0.7 90,876 + MCAODC_15555 0.13 +0.8 90,876 + MCAODC_15555 0.13 +1.0 90,876 + MCAODC_15555 0.13 -0.2 90,876 + MCAODC_15555 0.13 -2.3 90,876 + MCAODC_15555 0.13 -1.0 90,877 - MCAODC_15555 0.13 +1.4 90,877 - MCAODC_15555 0.13 +0.6 90,877 - MCAODC_15555 0.13 +1.3 90,877 - MCAODC_15555 0.13 -1.0 90,877 - MCAODC_15555 0.13 -1.1 90,877 - MCAODC_15555 0.13 -0.1 90,877 - MCAODC_15555 0.13 -0.2 90,878 + MCAODC_15555 0.14 -0.4 90,878 + MCAODC_15555 0.14 -0.9 90,931 - MCAODC_15555 0.27 -0.8 90,940 - MCAODC_15555 0.29 +0.7 90,991 - MCAODC_15555 0.41 -1.0 90,991 - MCAODC_15555 0.41 +0.1 90,991 - MCAODC_15555 0.41 +0.1 90,992 + MCAODC_15555 0.41 +1.0 90,992 + MCAODC_15555 0.41 +1.9 90,993 - MCAODC_15555 0.42 +0.3 91,063 - MCAODC_15555 0.59 -1.2 91,063 - MCAODC_15555 0.59 +0.5 91,064 + MCAODC_15555 0.59 -2.4 91,064 + MCAODC_15555 0.59 -0.4 91,065 - MCAODC_15555 0.59 +2.1 91,121 + MCAODC_15555 0.73 -0.8 91,165 - MCAODC_15555 0.83 +0.6 91,197 - +1.2 91,313 + +0.5 91,389 + -0.4 91,418 - -2.2 91,427 - -0.9 91,484 - -2.0 91,484 - +0.6 91,496 + -0.5 91,543 - -0.4 91,572 + -0.2 91,609 - +0.9 91,613 - -1.2 91,629 + -0.9
Or see this region's nucleotide sequence