Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sopA and sopA overlap by 1 nucleotides sopA and MCAODC_15440 are separated by 670 nucleotides
MCAODC_15430: sopA - plasmid-partitioning protein SopA, at 70,798 to 71,964
sopA
MCAODC_15435: sopA - plasmid-partitioning protein SopA, at 71,964 to 72,935
sopA
MCAODC_15440: MCAODC_15440 - DUF1281 domain-containing protein, at 73,606 to 74,532
_15440
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 71.043 kb on + strand, within sopA at 71.058 kb on + strand, within sopA at 71.064 kb on + strand, within sopA at 71.065 kb on - strand, within sopA at 71.204 kb on + strand, within sopA at 71.280 kb on + strand, within sopA at 71.338 kb on + strand, within sopA at 71.439 kb on + strand, within sopA at 71.550 kb on + strand, within sopA at 71.691 kb on + strand, within sopA at 71.715 kb on + strand, within sopA at 71.715 kb on + strand, within sopA at 71.718 kb on + strand, within sopA at 71.718 kb on + strand, within sopA at 71.814 kb on + strand, within sopA at 71.962 kb on + strand at 71.963 kb on - strand at 71.963 kb on - strand at 71.993 kb on + strand at 72.112 kb on + strand, within sopA at 72.610 kb on + strand, within sopA at 72.611 kb on - strand, within sopA at 72.758 kb on + strand, within sopA at 72.782 kb on + strand, within sopA at 72.828 kb on + strand, within sopA at 72.828 kb on + strand, within sopA at 72.829 kb on - strand, within sopA at 72.949 kb on + strand at 72.950 kb on - strand at 72.954 kb on + strand at 72.955 kb on - strand at 72.955 kb on - strand at 72.955 kb on - strand at 72.970 kb on + strand at 72.970 kb on + strand at 72.971 kb on - strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.974 kb on + strand at 72.975 kb on - strand at 72.975 kb on - strand at 73.003 kb on + strand at 73.003 kb on + strand at 73.003 kb on + strand at 73.004 kb on - strand at 73.004 kb on - strand at 73.004 kb on - strand at 73.045 kb on + strand at 73.045 kb on + strand at 73.045 kb on + strand at 73.046 kb on - strand at 73.088 kb on + strand at 73.103 kb on + strand at 73.104 kb on - strand at 73.106 kb on + strand at 73.107 kb on - strand at 73.107 kb on - strand at 73.217 kb on + strand at 73.218 kb on - strand at 73.254 kb on + strand at 73.254 kb on + strand at 73.255 kb on - strand at 73.255 kb on - strand at 73.255 kb on - strand at 73.277 kb on + strand at 73.278 kb on - strand at 73.278 kb on - strand at 73.278 kb on - strand at 73.300 kb on + strand at 73.301 kb on - strand at 73.310 kb on + strand at 73.329 kb on + strand at 73.329 kb on + strand at 73.330 kb on - strand at 73.330 kb on - strand at 73.330 kb on - strand at 73.386 kb on + strand at 73.386 kb on + strand at 73.399 kb on + strand at 73.407 kb on + strand at 73.629 kb on + strand at 73.630 kb on - strand at 73.633 kb on + strand at 73.634 kb on - strand at 73.634 kb on - strand at 73.668 kb on + strand at 73.725 kb on + strand, within MCAODC_15440 at 73.726 kb on - strand, within MCAODC_15440 at 73.726 kb on - strand, within MCAODC_15440 at 73.726 kb on - strand, within MCAODC_15440 at 73.726 kb on - strand, within MCAODC_15440 at 73.726 kb on - strand, within MCAODC_15440 at 73.881 kb on - strand, within MCAODC_15440
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 71,043 + sopA MCAODC_15430 0.21 -0.4 71,058 + sopA MCAODC_15430 0.22 -1.3 71,064 + sopA MCAODC_15430 0.23 +1.3 71,065 - sopA MCAODC_15430 0.23 +0.5 71,204 + sopA MCAODC_15430 0.35 -1.4 71,280 + sopA MCAODC_15430 0.41 -1.4 71,338 + sopA MCAODC_15430 0.46 -0.3 71,439 + sopA MCAODC_15430 0.55 +2.9 71,550 + sopA MCAODC_15430 0.64 +1.6 71,691 + sopA MCAODC_15430 0.77 +1.4 71,715 + sopA MCAODC_15430 0.79 +0.9 71,715 + sopA MCAODC_15430 0.79 +0.9 71,718 + sopA MCAODC_15430 0.79 -1.1 71,718 + sopA MCAODC_15430 0.79 +1.3 71,814 + sopA MCAODC_15430 0.87 -1.0 71,962 + -0.9 71,963 - +0.9 71,963 - -1.6 71,993 + -1.6 72,112 + sopA MCAODC_15435 0.15 +1.3 72,610 + sopA MCAODC_15435 0.66 -1.5 72,611 - sopA MCAODC_15435 0.67 +1.9 72,758 + sopA MCAODC_15435 0.82 +1.3 72,782 + sopA MCAODC_15435 0.84 +1.3 72,828 + sopA MCAODC_15435 0.89 -1.4 72,828 + sopA MCAODC_15435 0.89 -0.4 72,829 - sopA MCAODC_15435 0.89 -1.0 72,949 + +0.7 72,950 - +1.7 72,954 + +1.1 72,955 - +1.0 72,955 - +0.0 72,955 - -2.1 72,970 + +1.3 72,970 + -0.3 72,971 - -0.4 72,974 + +2.6 72,974 + +0.4 72,974 + -0.0 72,974 + -1.8 72,974 + -1.0 72,974 + +0.0 72,974 + -1.1 72,974 + +0.1 72,975 - +1.3 72,975 - -0.7 73,003 + -0.7 73,003 + -1.5 73,003 + -1.5 73,004 - +0.8 73,004 - +0.8 73,004 - -1.2 73,045 + -0.5 73,045 + -0.7 73,045 + +0.8 73,046 - +0.2 73,088 + +2.1 73,103 + -2.3 73,104 - -1.6 73,106 + -0.3 73,107 - -0.3 73,107 - +0.7 73,217 + +0.1 73,218 - -0.8 73,254 + -0.5 73,254 + -1.4 73,255 - -1.6 73,255 - +1.9 73,255 - -0.0 73,277 + +0.3 73,278 - +0.9 73,278 - -0.4 73,278 - +0.6 73,300 + -0.6 73,301 - +0.1 73,310 + +0.2 73,329 + +1.5 73,329 + -3.3 73,330 - -0.6 73,330 - +2.8 73,330 - +0.3 73,386 + -0.3 73,386 + -0.1 73,399 + -1.2 73,407 + -0.2 73,629 + +0.4 73,630 - +0.2 73,633 + -0.7 73,634 - -1.5 73,634 - -0.1 73,668 + +1.4 73,725 + MCAODC_15440 0.13 +1.0 73,726 - MCAODC_15440 0.13 +1.7 73,726 - MCAODC_15440 0.13 -1.3 73,726 - MCAODC_15440 0.13 -2.6 73,726 - MCAODC_15440 0.13 +1.5 73,726 - MCAODC_15440 0.13 +0.8 73,881 - MCAODC_15440 0.30 -1.9
Or see this region's nucleotide sequence