Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehX and yehW are separated by 4 nucleotides yehW and yohO overlap by 20 nucleotides yohO and mlrA are separated by 59 nucleotides mlrA and fimB are separated by 74 nucleotides
MCAODC_14720: yehX - glycine betaine ABC transporter ATP binding protein YehX, at 2,901,440 to 2,902,366
yehX
MCAODC_14725: yehW - glycine betaine ABC transporter permease YehW, at 2,902,371 to 2,903,102
yehW
MCAODC_14730: yohO - protein YohO, at 2,903,083 to 2,903,190
yohO
MCAODC_14735: mlrA - HTH-type transcriptional regulator MlrA, at 2,903,250 to 2,903,897
mlrA
MCAODC_14740: fimB - site-specific integrase, at 2,903,972 to 2,905,258
fimB
Position (kb)
2903
2904 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2902.183 kb on + strand, within yehX at 2902.183 kb on + strand, within yehX at 2902.183 kb on + strand, within yehX at 2902.184 kb on - strand, within yehX at 2902.184 kb on - strand, within yehX at 2902.184 kb on - strand, within yehX at 2902.196 kb on + strand, within yehX at 2902.196 kb on + strand, within yehX at 2902.365 kb on - strand at 2902.370 kb on + strand at 2902.440 kb on + strand at 2902.440 kb on + strand at 2902.637 kb on + strand, within yehW at 2902.637 kb on + strand, within yehW at 2902.638 kb on - strand, within yehW at 2902.740 kb on + strand, within yehW at 2902.741 kb on - strand, within yehW at 2902.821 kb on - strand, within yehW at 2902.850 kb on + strand, within yehW at 2902.850 kb on + strand, within yehW at 2902.994 kb on + strand, within yehW at 2902.997 kb on + strand, within yehW at 2903.004 kb on + strand, within yehW at 2903.005 kb on - strand, within yehW at 2903.106 kb on + strand, within yohO at 2903.148 kb on + strand, within yohO at 2903.183 kb on - strand at 2903.183 kb on - strand at 2903.183 kb on - strand at 2903.183 kb on - strand at 2903.183 kb on - strand at 2903.202 kb on + strand at 2903.203 kb on - strand at 2903.226 kb on + strand at 2903.227 kb on - strand at 2903.364 kb on + strand, within mlrA at 2903.365 kb on - strand, within mlrA at 2903.507 kb on + strand, within mlrA at 2903.508 kb on - strand, within mlrA at 2903.508 kb on - strand, within mlrA at 2903.536 kb on + strand, within mlrA at 2903.536 kb on + strand, within mlrA at 2903.536 kb on + strand, within mlrA at 2903.536 kb on + strand, within mlrA at 2903.537 kb on - strand, within mlrA at 2903.537 kb on - strand, within mlrA at 2903.537 kb on - strand, within mlrA at 2903.537 kb on - strand, within mlrA at 2903.537 kb on - strand, within mlrA at 2903.619 kb on - strand, within mlrA at 2903.650 kb on + strand, within mlrA at 2903.710 kb on + strand, within mlrA at 2903.986 kb on + strand at 2903.995 kb on + strand at 2904.014 kb on + strand at 2904.036 kb on - strand at 2904.121 kb on + strand, within fimB at 2904.122 kb on - strand, within fimB at 2904.127 kb on + strand, within fimB at 2904.134 kb on - strand, within fimB at 2904.134 kb on - strand, within fimB at 2904.162 kb on + strand, within fimB at 2904.162 kb on + strand, within fimB at 2904.162 kb on + strand, within fimB at 2904.162 kb on + strand, within fimB at 2904.162 kb on + strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.163 kb on - strand, within fimB at 2904.166 kb on + strand, within fimB at 2904.166 kb on + strand, within fimB at 2904.166 kb on + strand, within fimB at 2904.166 kb on + strand, within fimB at 2904.166 kb on + strand, within fimB at 2904.166 kb on + strand, within fimB at 2904.167 kb on - strand, within fimB at 2904.167 kb on - strand, within fimB at 2904.167 kb on - strand, within fimB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 2,902,183 + yehX MCAODC_14720 0.80 -1.7 2,902,183 + yehX MCAODC_14720 0.80 +0.5 2,902,183 + yehX MCAODC_14720 0.80 -1.5 2,902,184 - yehX MCAODC_14720 0.80 +0.8 2,902,184 - yehX MCAODC_14720 0.80 -0.7 2,902,184 - yehX MCAODC_14720 0.80 +0.5 2,902,196 + yehX MCAODC_14720 0.82 +0.2 2,902,196 + yehX MCAODC_14720 0.82 +0.0 2,902,365 - +0.1 2,902,370 + -0.4 2,902,440 + -0.6 2,902,440 + -2.0 2,902,637 + yehW MCAODC_14725 0.36 +0.6 2,902,637 + yehW MCAODC_14725 0.36 -2.0 2,902,638 - yehW MCAODC_14725 0.36 -0.7 2,902,740 + yehW MCAODC_14725 0.50 +0.3 2,902,741 - yehW MCAODC_14725 0.51 +0.2 2,902,821 - yehW MCAODC_14725 0.61 +4.3 2,902,850 + yehW MCAODC_14725 0.65 -0.2 2,902,850 + yehW MCAODC_14725 0.65 -3.5 2,902,994 + yehW MCAODC_14725 0.85 -0.9 2,902,997 + yehW MCAODC_14725 0.86 +1.1 2,903,004 + yehW MCAODC_14725 0.86 -0.2 2,903,005 - yehW MCAODC_14725 0.87 -0.6 2,903,106 + yohO MCAODC_14730 0.21 -2.6 2,903,148 + yohO MCAODC_14730 0.60 -1.5 2,903,183 - -0.7 2,903,183 - -0.2 2,903,183 - -1.0 2,903,183 - +1.9 2,903,183 - -0.0 2,903,202 + -0.8 2,903,203 - -1.1 2,903,226 + +0.6 2,903,227 - -0.2 2,903,364 + mlrA MCAODC_14735 0.18 -2.1 2,903,365 - mlrA MCAODC_14735 0.18 +0.9 2,903,507 + mlrA MCAODC_14735 0.40 -0.7 2,903,508 - mlrA MCAODC_14735 0.40 -0.9 2,903,508 - mlrA MCAODC_14735 0.40 -1.5 2,903,536 + mlrA MCAODC_14735 0.44 +0.0 2,903,536 + mlrA MCAODC_14735 0.44 -2.2 2,903,536 + mlrA MCAODC_14735 0.44 -0.0 2,903,536 + mlrA MCAODC_14735 0.44 +1.1 2,903,537 - mlrA MCAODC_14735 0.44 -1.0 2,903,537 - mlrA MCAODC_14735 0.44 +1.1 2,903,537 - mlrA MCAODC_14735 0.44 -0.7 2,903,537 - mlrA MCAODC_14735 0.44 -0.0 2,903,537 - mlrA MCAODC_14735 0.44 +0.1 2,903,619 - mlrA MCAODC_14735 0.57 -0.4 2,903,650 + mlrA MCAODC_14735 0.62 -2.3 2,903,710 + mlrA MCAODC_14735 0.71 +2.0 2,903,986 + -1.5 2,903,995 + -0.0 2,904,014 + -1.7 2,904,036 - -0.8 2,904,121 + fimB MCAODC_14740 0.12 -0.6 2,904,122 - fimB MCAODC_14740 0.12 +0.3 2,904,127 + fimB MCAODC_14740 0.12 +0.5 2,904,134 - fimB MCAODC_14740 0.13 -2.5 2,904,134 - fimB MCAODC_14740 0.13 -0.7 2,904,162 + fimB MCAODC_14740 0.15 +0.8 2,904,162 + fimB MCAODC_14740 0.15 -1.1 2,904,162 + fimB MCAODC_14740 0.15 +0.1 2,904,162 + fimB MCAODC_14740 0.15 +0.7 2,904,162 + fimB MCAODC_14740 0.15 +1.0 2,904,163 - fimB MCAODC_14740 0.15 +0.2 2,904,163 - fimB MCAODC_14740 0.15 +1.0 2,904,163 - fimB MCAODC_14740 0.15 +0.1 2,904,163 - fimB MCAODC_14740 0.15 -0.3 2,904,163 - fimB MCAODC_14740 0.15 -2.2 2,904,163 - fimB MCAODC_14740 0.15 +1.5 2,904,163 - fimB MCAODC_14740 0.15 -0.2 2,904,166 + fimB MCAODC_14740 0.15 -0.2 2,904,166 + fimB MCAODC_14740 0.15 -0.5 2,904,166 + fimB MCAODC_14740 0.15 +0.2 2,904,166 + fimB MCAODC_14740 0.15 -1.3 2,904,166 + fimB MCAODC_14740 0.15 +0.7 2,904,166 + fimB MCAODC_14740 0.15 +0.6 2,904,167 - fimB MCAODC_14740 0.15 +0.5 2,904,167 - fimB MCAODC_14740 0.15 +1.1 2,904,167 - fimB MCAODC_14740 0.15 +0.1
Or see this region's nucleotide sequence