Strain Fitness in Escherichia coli ECRC101 around MCAODC_12815

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
2,538,993	+				-2.9
2,538,993	+				+0.8
2,538,994	-				-0.5
2,538,994	-				-1.2
2,538,994	-				+0.3
2,538,994	-				-0.8
2,539,080	+	yfeD	MCAODC_12805	0.27	+1.9
2,539,080	+	yfeD	MCAODC_12805	0.27	-0.0
2,539,080	+	yfeD	MCAODC_12805	0.27	+1.9
2,539,081	-	yfeD	MCAODC_12805	0.28	+0.8
2,539,226	+	yfeD	MCAODC_12805	0.67	+0.9
2,539,226	+	yfeD	MCAODC_12805	0.67	-1.0
2,539,226	+	yfeD	MCAODC_12805	0.67	+0.4
2,539,227	-	yfeD	MCAODC_12805	0.67	-0.4
2,539,374	-				-0.2
2,539,374	-				-1.3
2,539,402	+				-0.2
2,539,403	-				-0.9
2,539,403	-				+0.0
2,539,493	-	yfeC	MCAODC_12810	0.34	-0.0
2,539,493	-	yfeC	MCAODC_12810	0.34	+0.0
2,539,558	-	yfeC	MCAODC_12810	0.52	+0.2
2,539,558	-	yfeC	MCAODC_12810	0.52	+0.5
2,539,563	+	yfeC	MCAODC_12810	0.53	+0.6
2,539,564	-	yfeC	MCAODC_12810	0.53	-1.4
2,539,565	+	yfeC	MCAODC_12810	0.54	+0.1
2,539,566	-	yfeC	MCAODC_12810	0.54	+2.4
2,539,662	+	yfeC	MCAODC_12810	0.81	+0.8
2,539,681	-	yfeC	MCAODC_12810	0.86	-0.8
2,539,682	+	yfeC	MCAODC_12810	0.86	+0.3
2,539,748	+				-0.3
2,539,748	+				-0.9
2,539,748	+				+0.5
2,539,749	-				+0.3
2,539,765	-				-0.8
2,539,765	-				+0.7
2,539,774	+				-0.1
2,539,777	-				+0.0
2,539,777	-				-0.6
2,539,808	+				-1.0
2,539,809	-				+0.1
2,539,809	-				-1.1
2,539,809	-				+0.1
2,539,809	-				+1.5
2,539,812	+				-0.0
2,539,812	+				+1.0
2,539,812	+				-1.4
2,539,812	+				-1.1
2,539,812	+				+1.9
2,539,813	-				+0.1
2,539,813	-				-1.6
2,539,813	-				-2.0
2,539,813	-				+0.5
2,539,944	+				-1.3
2,539,944	+				-1.6
2,539,957	+				-2.3
2,539,959	+				-0.5
2,539,959	+				-2.7
2,539,959	+				-0.6
2,539,959	+				-1.3
2,539,959	+				-0.0
2,539,959	+				-1.7
2,539,959	+				-1.6
2,539,959	+				-4.5
2,540,017	+	Ala_trna	MCAODC_12815	0.86	-0.5
2,540,017	+	Ala_trna	MCAODC_12815	0.86	-1.1
2,540,055	+				-0.8
2,540,201	+				+0.2
2,540,204	+				+0.6
2,540,212	-				-2.0
2,540,212	-				-2.3
2,540,340	+				-1.8
2,540,346	-				-2.0
2,540,388	-				+2.9
2,540,404	-				-2.3
2,540,421	+				-2.0
2,540,421	+				-2.5
2,540,422	-				-4.5
2,540,439	+				-1.3
2,540,470	+				-0.6
2,540,502	-				-3.1
2,540,552	+				-4.4
2,540,657	+	pdeA	MCAODC_12825	0.14	-1.3
2,540,707	+	pdeA	MCAODC_12825	0.16	-3.2
2,540,770	+	pdeA	MCAODC_12825	0.19	-2.7
2,540,770	+	pdeA	MCAODC_12825	0.19	-1.5
2,540,770	+	pdeA	MCAODC_12825	0.19	-2.6
2,540,771	-	pdeA	MCAODC_12825	0.19	-1.5
2,540,771	-	pdeA	MCAODC_12825	0.19	-1.5
2,540,900	-	pdeA	MCAODC_12825	0.25	-1.5
2,540,921	+	pdeA	MCAODC_12825	0.26	-1.8
2,540,921	+	pdeA	MCAODC_12825	0.26	-3.3
2,540,922	-	pdeA	MCAODC_12825	0.26	-3.3
2,540,922	-	pdeA	MCAODC_12825	0.26	-1.0
2,540,994	+	pdeA	MCAODC_12825	0.29	-2.5
2,540,999	+	pdeA	MCAODC_12825	0.30	-3.7
2,540,999	+	pdeA	MCAODC_12825	0.30	-1.4
2,541,000	-	pdeA	MCAODC_12825	0.30	-2.7
2,541,000	-	pdeA	MCAODC_12825	0.30	-1.2
2,541,018	-	pdeA	MCAODC_12825	0.31	-2.9