Strain Fitness in Escherichia coli ECRC101 around MCAODC_06205

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaL and rfaC overlap by 4 nucleotidesrfaC and rfaF are separated by 3 nucleotidesrfaF and rfaD are separated by 9 nucleotides MCAODC_06195: rfaL - O-antigen ligase RfaL, at 1,241,162 to 1,242,370 rfaL MCAODC_06200: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 1,242,367 to 1,243,359 rfaC MCAODC_06205: rfaF - ADP-heptose--LPS heptosyltransferase RfaF, at 1,243,363 to 1,244,409 rfaF MCAODC_06210: rfaD - ADP-glyceromanno-heptose 6-epimerase, at 1,244,419 to 1,245,351 rfaD Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1243.379 kb on - strandat 1243.379 kb on - strandat 1243.379 kb on - strandat 1243.420 kb on - strandat 1243.812 kb on - strand, within rfaFat 1243.812 kb on - strand, within rfaFat 1243.905 kb on - strand, within rfaFat 1244.150 kb on - strand, within rfaFat 1244.187 kb on + strand, within rfaFat 1244.248 kb on - strand, within rfaFat 1244.421 kb on - strandat 1245.370 kb on - strandat 1245.370 kb on - strandat 1245.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,243,379 - +0.6
1,243,379 - +1.8
1,243,379 - -0.4
1,243,420 - -0.0
1,243,812 - rfaF MCAODC_06205 0.43 -1.1
1,243,812 - rfaF MCAODC_06205 0.43 -0.5
1,243,905 - rfaF MCAODC_06205 0.52 -1.7
1,244,150 - rfaF MCAODC_06205 0.75 -1.2
1,244,187 + rfaF MCAODC_06205 0.79 +1.4
1,244,248 - rfaF MCAODC_06205 0.85 -1.5
1,244,421 - -0.6
1,245,370 - -2.8
1,245,370 - -2.1
1,245,406 - +0.8

Or see this region's nucleotide sequence