Strain Fitness in Escherichia coli ECRC101 around MCAODC_05995

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_05985 and MCAODC_05990 are separated by 293 nucleotidesMCAODC_05990 and MCAODC_05995 overlap by 4 nucleotidesMCAODC_05995 and tra5 are separated by 250 nucleotides MCAODC_05985: MCAODC_05985 - Aec79, at 1,200,868 to 1,201,209 _05985 MCAODC_05990: MCAODC_05990 - DUF5983 domain-containing protein, at 1,201,503 to 1,201,994 _05990 MCAODC_05995: MCAODC_05995 - toxin, at 1,201,991 to 1,202,365 _05995 MCAODC_06000: tra5 - IS3 family transposase, at 1,202,616 to 1,203,362 tra5 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1201.164 kb on + strand, within MCAODC_05985at 1201.196 kb on - strandat 1201.196 kb on - strandat 1201.196 kb on - strandat 1201.196 kb on - strandat 1201.231 kb on - strandat 1201.279 kb on + strandat 1201.279 kb on + strandat 1201.280 kb on - strandat 1201.280 kb on - strandat 1201.280 kb on - strandat 1201.280 kb on - strandat 1201.280 kb on - strandat 1201.280 kb on - strandat 1201.389 kb on + strandat 1201.410 kb on + strandat 1201.411 kb on - strandat 1201.432 kb on - strandat 1201.480 kb on + strandat 1201.481 kb on - strandat 1201.500 kb on + strandat 1201.500 kb on + strandat 1201.500 kb on + strandat 1201.500 kb on + strandat 1201.500 kb on + strandat 1201.500 kb on + strandat 1201.501 kb on - strandat 1201.501 kb on - strandat 1201.501 kb on - strandat 1201.504 kb on + strandat 1201.504 kb on + strandat 1201.504 kb on + strandat 1201.504 kb on + strandat 1201.505 kb on - strandat 1201.511 kb on + strandat 1201.512 kb on - strandat 1201.521 kb on + strandat 1201.805 kb on + strand, within MCAODC_05990at 1201.805 kb on + strand, within MCAODC_05990at 1201.806 kb on - strand, within MCAODC_05990at 1201.806 kb on - strand, within MCAODC_05990at 1201.886 kb on + strand, within MCAODC_05990at 1201.886 kb on + strand, within MCAODC_05990at 1201.905 kb on - strand, within MCAODC_05990at 1201.905 kb on - strand, within MCAODC_05990at 1201.951 kb on - strandat 1202.209 kb on + strand, within MCAODC_05995at 1202.366 kb on - strandat 1202.368 kb on + strandat 1202.368 kb on + strandat 1202.368 kb on + strandat 1202.369 kb on - strandat 1202.383 kb on + strandat 1202.456 kb on + strandat 1202.481 kb on - strandat 1202.490 kb on + strandat 1202.490 kb on + strandat 1202.491 kb on - strandat 1202.491 kb on - strandat 1202.492 kb on + strandat 1202.492 kb on + strandat 1202.492 kb on + strandat 1202.492 kb on + strandat 1202.492 kb on + strandat 1202.493 kb on - strandat 1202.493 kb on - strandat 1202.493 kb on - strandat 1202.493 kb on - strandat 1202.493 kb on - strandat 1202.499 kb on - strandat 1202.610 kb on + strandat 1202.621 kb on + strandat 1202.621 kb on + strandat 1202.622 kb on - strandat 1202.622 kb on - strandat 1202.622 kb on - strandat 1202.624 kb on + strandat 1202.625 kb on - strandat 1202.625 kb on - strandat 1202.640 kb on - strandat 1202.645 kb on - strandat 1202.690 kb on + strandat 1202.690 kb on + strandat 1202.691 kb on - strand, within tra5at 1202.692 kb on + strand, within tra5at 1202.692 kb on + strand, within tra5at 1202.692 kb on + strand, within tra5at 1202.692 kb on + strand, within tra5at 1202.692 kb on + strand, within tra5at 1202.692 kb on + strand, within tra5at 1202.693 kb on - strand, within tra5at 1202.693 kb on - strand, within tra5at 1202.693 kb on - strand, within tra5at 1202.711 kb on + strand, within tra5at 1202.711 kb on + strand, within tra5at 1202.712 kb on - strand, within tra5at 1202.712 kb on - strand, within tra5at 1202.716 kb on + strand, within tra5at 1202.716 kb on + strand, within tra5at 1202.717 kb on - strand, within tra5at 1202.717 kb on - strand, within tra5at 1202.729 kb on + strand, within tra5at 1202.729 kb on + strand, within tra5at 1202.729 kb on + strand, within tra5at 1202.730 kb on - strand, within tra5at 1202.730 kb on - strand, within tra5at 1202.731 kb on + strand, within tra5at 1202.731 kb on + strand, within tra5at 1202.732 kb on - strand, within tra5at 1202.732 kb on - strand, within tra5at 1202.868 kb on + strand, within tra5at 1202.909 kb on + strand, within tra5at 1202.909 kb on + strand, within tra5at 1202.910 kb on - strand, within tra5at 1202.912 kb on - strand, within tra5at 1202.912 kb on - strand, within tra5at 1202.968 kb on + strand, within tra5at 1202.968 kb on + strand, within tra5at 1202.969 kb on - strand, within tra5at 1202.992 kb on - strand, within tra5at 1203.095 kb on + strand, within tra5at 1203.095 kb on + strand, within tra5at 1203.096 kb on - strand, within tra5at 1203.097 kb on + strand, within tra5at 1203.097 kb on + strand, within tra5at 1203.097 kb on + strand, within tra5at 1203.097 kb on + strand, within tra5at 1203.097 kb on + strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.098 kb on - strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.101 kb on + strand, within tra5at 1203.102 kb on - strand, within tra5at 1203.102 kb on - strand, within tra5at 1203.102 kb on - strand, within tra5at 1203.102 kb on - strand, within tra5at 1203.104 kb on + strand, within tra5at 1203.104 kb on + strand, within tra5at 1203.104 kb on + strand, within tra5at 1203.104 kb on + strand, within tra5at 1203.105 kb on - strand, within tra5at 1203.105 kb on - strand, within tra5at 1203.105 kb on - strand, within tra5at 1203.173 kb on + strand, within tra5at 1203.173 kb on + strand, within tra5at 1203.173 kb on + strand, within tra5at 1203.173 kb on + strand, within tra5at 1203.173 kb on + strand, within tra5at 1203.173 kb on + strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.174 kb on - strand, within tra5at 1203.235 kb on + strand, within tra5at 1203.327 kb on - strandat 1203.348 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,201,164 + MCAODC_05985 0.87 +0.2
1,201,196 - +0.0
1,201,196 - +1.3
1,201,196 - +0.4
1,201,196 - +0.9
1,201,231 - -0.3
1,201,279 + +0.4
1,201,279 + +0.5
1,201,280 - -0.4
1,201,280 - +0.1
1,201,280 - -0.1
1,201,280 - -1.0
1,201,280 - -1.1
1,201,280 - -0.0
1,201,389 + -0.1
1,201,410 + +0.0
1,201,411 - +2.2
1,201,432 - +0.0
1,201,480 + -0.0
1,201,481 - -0.7
1,201,500 + +0.9
1,201,500 + +0.2
1,201,500 + +0.1
1,201,500 + -1.7
1,201,500 + -0.4
1,201,500 + -1.2
1,201,501 - -0.7
1,201,501 - +1.3
1,201,501 - -0.3
1,201,504 + -0.8
1,201,504 + +0.2
1,201,504 + -0.4
1,201,504 + -1.5
1,201,505 - +0.7
1,201,511 + +1.1
1,201,512 - -0.7
1,201,521 + -0.0
1,201,805 + MCAODC_05990 0.61 +0.2
1,201,805 + MCAODC_05990 0.61 -0.9
1,201,806 - MCAODC_05990 0.62 +0.2
1,201,806 - MCAODC_05990 0.62 -0.2
1,201,886 + MCAODC_05990 0.78 +1.0
1,201,886 + MCAODC_05990 0.78 +0.6
1,201,905 - MCAODC_05990 0.82 +0.2
1,201,905 - MCAODC_05990 0.82 +0.2
1,201,951 - -0.1
1,202,209 + MCAODC_05995 0.58 -1.3
1,202,366 - -2.0
1,202,368 + -1.5
1,202,368 + -0.3
1,202,368 + -3.1
1,202,369 - +0.0
1,202,383 + +0.2
1,202,456 + +0.8
1,202,481 - -0.3
1,202,490 + +0.1
1,202,490 + +0.9
1,202,491 - +0.3
1,202,491 - -0.4
1,202,492 + +1.1
1,202,492 + +0.0
1,202,492 + +0.3
1,202,492 + +0.1
1,202,492 + +0.5
1,202,493 - +0.1
1,202,493 - +0.5
1,202,493 - +0.1
1,202,493 - -0.3
1,202,493 - +2.0
1,202,499 - +0.8
1,202,610 + +0.3
1,202,621 + -0.1
1,202,621 + +0.3
1,202,622 - -0.1
1,202,622 - +0.5
1,202,622 - +0.5
1,202,624 + +1.1
1,202,625 - +1.4
1,202,625 - -0.8
1,202,640 - -0.1
1,202,645 - -0.8
1,202,690 + +1.6
1,202,690 + +0.2
1,202,691 - tra5 MCAODC_06000 0.10 +3.0
1,202,692 + tra5 MCAODC_06000 0.10 -0.1
1,202,692 + tra5 MCAODC_06000 0.10 -0.9
1,202,692 + tra5 MCAODC_06000 0.10 +0.3
1,202,692 + tra5 MCAODC_06000 0.10 -3.6
1,202,692 + tra5 MCAODC_06000 0.10 -1.6
1,202,692 + tra5 MCAODC_06000 0.10 -0.8
1,202,693 - tra5 MCAODC_06000 0.10 -1.7
1,202,693 - tra5 MCAODC_06000 0.10 -0.1
1,202,693 - tra5 MCAODC_06000 0.10 -0.0
1,202,711 + tra5 MCAODC_06000 0.13 -0.5
1,202,711 + tra5 MCAODC_06000 0.13 +1.0
1,202,712 - tra5 MCAODC_06000 0.13 +1.6
1,202,712 - tra5 MCAODC_06000 0.13 +0.4
1,202,716 + tra5 MCAODC_06000 0.13 +0.3
1,202,716 + tra5 MCAODC_06000 0.13 +0.3
1,202,717 - tra5 MCAODC_06000 0.14 +0.7
1,202,717 - tra5 MCAODC_06000 0.14 +0.6
1,202,729 + tra5 MCAODC_06000 0.15 -1.1
1,202,729 + tra5 MCAODC_06000 0.15 +0.1
1,202,729 + tra5 MCAODC_06000 0.15 -1.1
1,202,730 - tra5 MCAODC_06000 0.15 +1.1
1,202,730 - tra5 MCAODC_06000 0.15 +0.2
1,202,731 + tra5 MCAODC_06000 0.15 +1.3
1,202,731 + tra5 MCAODC_06000 0.15 +0.9
1,202,732 - tra5 MCAODC_06000 0.16 -0.0
1,202,732 - tra5 MCAODC_06000 0.16 +0.3
1,202,868 + tra5 MCAODC_06000 0.34 +1.0
1,202,909 + tra5 MCAODC_06000 0.39 -1.1
1,202,909 + tra5 MCAODC_06000 0.39 +0.6
1,202,910 - tra5 MCAODC_06000 0.39 +2.3
1,202,912 - tra5 MCAODC_06000 0.40 -0.0
1,202,912 - tra5 MCAODC_06000 0.40 -0.4
1,202,968 + tra5 MCAODC_06000 0.47 -0.0
1,202,968 + tra5 MCAODC_06000 0.47 +0.6
1,202,969 - tra5 MCAODC_06000 0.47 -0.1
1,202,992 - tra5 MCAODC_06000 0.50 +0.5
1,203,095 + tra5 MCAODC_06000 0.64 +0.2
1,203,095 + tra5 MCAODC_06000 0.64 -0.8
1,203,096 - tra5 MCAODC_06000 0.64 +1.0
1,203,097 + tra5 MCAODC_06000 0.64 -0.3
1,203,097 + tra5 MCAODC_06000 0.64 +0.1
1,203,097 + tra5 MCAODC_06000 0.64 +0.0
1,203,097 + tra5 MCAODC_06000 0.64 +0.7
1,203,097 + tra5 MCAODC_06000 0.64 -0.4
1,203,098 - tra5 MCAODC_06000 0.65 -0.7
1,203,098 - tra5 MCAODC_06000 0.65 -3.2
1,203,098 - tra5 MCAODC_06000 0.65 +0.0
1,203,098 - tra5 MCAODC_06000 0.65 -1.5
1,203,098 - tra5 MCAODC_06000 0.65 +0.6
1,203,098 - tra5 MCAODC_06000 0.65 -1.3
1,203,098 - tra5 MCAODC_06000 0.65 -0.9
1,203,101 + tra5 MCAODC_06000 0.65 +0.5
1,203,101 + tra5 MCAODC_06000 0.65 +0.2
1,203,101 + tra5 MCAODC_06000 0.65 -0.6
1,203,101 + tra5 MCAODC_06000 0.65 +0.9
1,203,101 + tra5 MCAODC_06000 0.65 +0.5
1,203,101 + tra5 MCAODC_06000 0.65 -0.7
1,203,101 + tra5 MCAODC_06000 0.65 -0.6
1,203,102 - tra5 MCAODC_06000 0.65 -0.7
1,203,102 - tra5 MCAODC_06000 0.65 +1.1
1,203,102 - tra5 MCAODC_06000 0.65 +0.3
1,203,102 - tra5 MCAODC_06000 0.65 +0.6
1,203,104 + tra5 MCAODC_06000 0.65 +0.9
1,203,104 + tra5 MCAODC_06000 0.65 -0.9
1,203,104 + tra5 MCAODC_06000 0.65 -1.0
1,203,104 + tra5 MCAODC_06000 0.65 +0.5
1,203,105 - tra5 MCAODC_06000 0.65 -0.2
1,203,105 - tra5 MCAODC_06000 0.65 +0.0
1,203,105 - tra5 MCAODC_06000 0.65 +0.6
1,203,173 + tra5 MCAODC_06000 0.75 -0.8
1,203,173 + tra5 MCAODC_06000 0.75 -0.7
1,203,173 + tra5 MCAODC_06000 0.75 +0.4
1,203,173 + tra5 MCAODC_06000 0.75 -1.2
1,203,173 + tra5 MCAODC_06000 0.75 +3.1
1,203,173 + tra5 MCAODC_06000 0.75 -1.0
1,203,174 - tra5 MCAODC_06000 0.75 -1.7
1,203,174 - tra5 MCAODC_06000 0.75 -1.3
1,203,174 - tra5 MCAODC_06000 0.75 +0.8
1,203,174 - tra5 MCAODC_06000 0.75 +1.4
1,203,174 - tra5 MCAODC_06000 0.75 +0.7
1,203,174 - tra5 MCAODC_06000 0.75 +0.2
1,203,174 - tra5 MCAODC_06000 0.75 +1.5
1,203,174 - tra5 MCAODC_06000 0.75 +0.3
1,203,174 - tra5 MCAODC_06000 0.75 -1.2
1,203,235 + tra5 MCAODC_06000 0.83 +1.3
1,203,327 - +0.1
1,203,348 + -1.5

Or see this region's nucleotide sequence