Strain Fitness in Escherichia coli ECRC101 around MCAODC_05490

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_05485 and MCAODC_05490 overlap by 50 nucleotidesMCAODC_05490 and MCAODC_05495 are separated by 149 nucleotides MCAODC_05485: MCAODC_05485 - toxin, at 1,109,427 to 1,111,415 _05485 MCAODC_05490: MCAODC_05490 - hypothetical protein, at 1,111,366 to 1,111,596 _05490 MCAODC_05495: MCAODC_05495 - tRNA modification GTPase MnmE, at 1,111,746 to 1,113,110 _05495 Position (kb) 1111 1112Strain fitness (log2 ratio) -2 -1 0 1at 1110.422 kb on - strand, within MCAODC_05485at 1110.476 kb on - strand, within MCAODC_05485at 1110.595 kb on + strand, within MCAODC_05485at 1110.596 kb on - strand, within MCAODC_05485at 1110.619 kb on - strand, within MCAODC_05485at 1110.805 kb on + strand, within MCAODC_05485at 1110.806 kb on - strand, within MCAODC_05485at 1110.859 kb on + strand, within MCAODC_05485at 1110.987 kb on - strand, within MCAODC_05485at 1111.057 kb on + strand, within MCAODC_05485at 1111.082 kb on + strand, within MCAODC_05485at 1111.203 kb on + strand, within MCAODC_05485at 1111.204 kb on - strand, within MCAODC_05485at 1111.204 kb on - strand, within MCAODC_05485at 1111.204 kb on - strand, within MCAODC_05485at 1111.204 kb on - strand, within MCAODC_05485at 1111.316 kb on + strandat 1111.371 kb on - strandat 1111.371 kb on - strandat 1111.372 kb on + strandat 1111.373 kb on - strandat 1111.373 kb on - strandat 1111.373 kb on - strandat 1111.373 kb on - strandat 1111.373 kb on - strandat 1111.374 kb on + strandat 1111.431 kb on + strand, within MCAODC_05490at 1111.477 kb on + strand, within MCAODC_05490at 1111.520 kb on + strand, within MCAODC_05490at 1111.638 kb on + strandat 1111.694 kb on + strandat 1111.695 kb on - strandat 1111.698 kb on + strandat 1111.728 kb on + strandat 1111.728 kb on + strandat 1111.729 kb on - strandat 1111.729 kb on - strandat 1111.729 kb on - strandat 1111.729 kb on - strandat 1111.747 kb on + strandat 1111.747 kb on + strandat 1111.747 kb on + strandat 1111.747 kb on + strandat 1111.747 kb on + strandat 1111.748 kb on - strandat 1111.748 kb on - strandat 1111.748 kb on - strandat 1111.892 kb on + strand, within MCAODC_05495

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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1,110,422 - MCAODC_05485 0.50 -0.2
1,110,476 - MCAODC_05485 0.53 +0.5
1,110,595 + MCAODC_05485 0.59 -2.6
1,110,596 - MCAODC_05485 0.59 +0.8
1,110,619 - MCAODC_05485 0.60 +0.2
1,110,805 + MCAODC_05485 0.69 -0.1
1,110,806 - MCAODC_05485 0.69 +0.8
1,110,859 + MCAODC_05485 0.72 -0.0
1,110,987 - MCAODC_05485 0.78 +0.1
1,111,057 + MCAODC_05485 0.82 -0.5
1,111,082 + MCAODC_05485 0.83 -0.7
1,111,203 + MCAODC_05485 0.89 -0.2
1,111,204 - MCAODC_05485 0.89 +0.5
1,111,204 - MCAODC_05485 0.89 -0.2
1,111,204 - MCAODC_05485 0.89 +0.2
1,111,204 - MCAODC_05485 0.89 +0.2
1,111,316 + -0.6
1,111,371 - -0.9
1,111,371 - -1.9
1,111,372 + -0.7
1,111,373 - -0.3
1,111,373 - -0.7
1,111,373 - +0.1
1,111,373 - +0.8
1,111,373 - +0.2
1,111,374 + -0.3
1,111,431 + MCAODC_05490 0.28 -2.0
1,111,477 + MCAODC_05490 0.48 -1.1
1,111,520 + MCAODC_05490 0.67 +0.4
1,111,638 + -0.7
1,111,694 + -1.1
1,111,695 - +0.7
1,111,698 + +0.1
1,111,728 + -2.1
1,111,728 + -1.5
1,111,729 - +0.0
1,111,729 - -1.0
1,111,729 - +0.2
1,111,729 - -0.1
1,111,747 + +0.9
1,111,747 + +0.2
1,111,747 + -0.2
1,111,747 + -1.1
1,111,747 + -0.2
1,111,748 - +0.3
1,111,748 - +0.8
1,111,748 - -0.6
1,111,892 + MCAODC_05495 0.11 -0.7

Or see this region's nucleotide sequence