Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_05485 and MCAODC_05490 overlap by 50 nucleotides MCAODC_05490 and MCAODC_05495 are separated by 149 nucleotides
MCAODC_05485: MCAODC_05485 - toxin, at 1,109,427 to 1,111,415
_05485
MCAODC_05490: MCAODC_05490 - hypothetical protein, at 1,111,366 to 1,111,596
_05490
MCAODC_05495: MCAODC_05495 - tRNA modification GTPase MnmE, at 1,111,746 to 1,113,110
_05495
Position (kb)
1111
1112 Strain fitness (log2 ratio)
-2
-1
0
1 at 1110.422 kb on - strand, within MCAODC_05485 at 1110.476 kb on - strand, within MCAODC_05485 at 1110.595 kb on + strand, within MCAODC_05485 at 1110.596 kb on - strand, within MCAODC_05485 at 1110.619 kb on - strand, within MCAODC_05485 at 1110.805 kb on + strand, within MCAODC_05485 at 1110.806 kb on - strand, within MCAODC_05485 at 1110.859 kb on + strand, within MCAODC_05485 at 1110.987 kb on - strand, within MCAODC_05485 at 1111.057 kb on + strand, within MCAODC_05485 at 1111.082 kb on + strand, within MCAODC_05485 at 1111.203 kb on + strand, within MCAODC_05485 at 1111.204 kb on - strand, within MCAODC_05485 at 1111.204 kb on - strand, within MCAODC_05485 at 1111.204 kb on - strand, within MCAODC_05485 at 1111.204 kb on - strand, within MCAODC_05485 at 1111.316 kb on + strand at 1111.371 kb on - strand at 1111.371 kb on - strand at 1111.372 kb on + strand at 1111.373 kb on - strand at 1111.373 kb on - strand at 1111.373 kb on - strand at 1111.373 kb on - strand at 1111.373 kb on - strand at 1111.374 kb on + strand at 1111.431 kb on + strand, within MCAODC_05490 at 1111.477 kb on + strand, within MCAODC_05490 at 1111.520 kb on + strand, within MCAODC_05490 at 1111.638 kb on + strand at 1111.694 kb on + strand at 1111.695 kb on - strand at 1111.698 kb on + strand at 1111.728 kb on + strand at 1111.728 kb on + strand at 1111.729 kb on - strand at 1111.729 kb on - strand at 1111.729 kb on - strand at 1111.729 kb on - strand at 1111.747 kb on + strand at 1111.747 kb on + strand at 1111.747 kb on + strand at 1111.747 kb on + strand at 1111.747 kb on + strand at 1111.748 kb on - strand at 1111.748 kb on - strand at 1111.748 kb on - strand at 1111.892 kb on + strand, within MCAODC_05495
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,110,422 - MCAODC_05485 0.50 -0.2 1,110,476 - MCAODC_05485 0.53 +0.5 1,110,595 + MCAODC_05485 0.59 -2.6 1,110,596 - MCAODC_05485 0.59 +0.8 1,110,619 - MCAODC_05485 0.60 +0.2 1,110,805 + MCAODC_05485 0.69 -0.1 1,110,806 - MCAODC_05485 0.69 +0.8 1,110,859 + MCAODC_05485 0.72 -0.0 1,110,987 - MCAODC_05485 0.78 +0.1 1,111,057 + MCAODC_05485 0.82 -0.5 1,111,082 + MCAODC_05485 0.83 -0.7 1,111,203 + MCAODC_05485 0.89 -0.2 1,111,204 - MCAODC_05485 0.89 +0.5 1,111,204 - MCAODC_05485 0.89 -0.2 1,111,204 - MCAODC_05485 0.89 +0.2 1,111,204 - MCAODC_05485 0.89 +0.2 1,111,316 + -0.6 1,111,371 - -0.9 1,111,371 - -1.9 1,111,372 + -0.7 1,111,373 - -0.3 1,111,373 - -0.7 1,111,373 - +0.1 1,111,373 - +0.8 1,111,373 - +0.2 1,111,374 + -0.3 1,111,431 + MCAODC_05490 0.28 -2.0 1,111,477 + MCAODC_05490 0.48 -1.1 1,111,520 + MCAODC_05490 0.67 +0.4 1,111,638 + -0.7 1,111,694 + -1.1 1,111,695 - +0.7 1,111,698 + +0.1 1,111,728 + -2.1 1,111,728 + -1.5 1,111,729 - +0.0 1,111,729 - -1.0 1,111,729 - +0.2 1,111,729 - -0.1 1,111,747 + +0.9 1,111,747 + +0.2 1,111,747 + -0.2 1,111,747 + -1.1 1,111,747 + -0.2 1,111,748 - +0.3 1,111,748 - +0.8 1,111,748 - -0.6 1,111,892 + MCAODC_05495 0.11 -0.7
Or see this region's nucleotide sequence