Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yigA and dapF overlap by 4 nucleotides dapF and yifL are separated by 36 nucleotides yifL and cyaY are separated by 462 nucleotides cyaY and cyaA are separated by 39 nucleotides
MCAODC_04930: yigA - Uncharacterized protein YigA, at 996,202 to 996,909
yigA
MCAODC_04935: dapF - diaminopimelate epimerase, at 996,906 to 997,730
dapF
MCAODC_04940: yifL - Uncharacterized lipoprotein YifL, at 997,767 to 997,970
yifL
MCAODC_04945: cyaY - iron donor protein CyaY, at 998,433 to 998,753
cyaY
MCAODC_04950: cyaA - class I adenylate cyclase, at 998,793 to 1,001,339
cyaA
Position (kb) 997
998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 996.788 kb on - strand, within yigA at 996.842 kb on + strand at 996.909 kb on + strand at 996.909 kb on + strand at 996.909 kb on + strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.910 kb on - strand at 996.917 kb on + strand at 997.753 kb on - strand at 997.769 kb on - strand at 997.772 kb on - strand at 997.772 kb on - strand at 997.892 kb on - strand, within yifL at 997.935 kb on - strand, within yifL at 997.935 kb on - strand, within yifL at 997.938 kb on + strand, within yifL at 997.939 kb on - strand, within yifL at 997.939 kb on - strand, within yifL at 997.939 kb on - strand, within yifL at 997.939 kb on - strand, within yifL at 997.941 kb on + strand, within yifL at 997.984 kb on + strand at 997.984 kb on + strand at 998.008 kb on + strand at 998.008 kb on + strand at 998.009 kb on - strand at 998.028 kb on + strand at 998.029 kb on - strand at 998.029 kb on - strand at 998.053 kb on + strand at 998.054 kb on - strand at 998.054 kb on - strand at 998.086 kb on + strand at 998.086 kb on + strand at 998.087 kb on - strand at 998.088 kb on + strand at 998.095 kb on + strand at 998.095 kb on + strand at 998.096 kb on - strand at 998.109 kb on + strand at 998.109 kb on + strand at 998.109 kb on + strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.158 kb on + strand at 998.165 kb on + strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.273 kb on - strand at 998.273 kb on - strand at 998.283 kb on + strand at 998.306 kb on + strand at 998.307 kb on - strand at 998.323 kb on - strand at 998.323 kb on - strand at 998.323 kb on - strand at 998.397 kb on + strand at 998.398 kb on - strand at 998.398 kb on - strand at 998.399 kb on + strand at 998.399 kb on + strand at 998.416 kb on - strand at 998.426 kb on + strand at 998.426 kb on + strand at 998.427 kb on - strand at 998.555 kb on + strand, within cyaY at 998.555 kb on + strand, within cyaY at 998.556 kb on - strand, within cyaY at 998.556 kb on - strand, within cyaY at 998.583 kb on - strand, within cyaY at 998.611 kb on + strand, within cyaY at 998.811 kb on + strand at 998.811 kb on + strand at 998.811 kb on + strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.822 kb on + strand at 998.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 996,788 - yigA MCAODC_04930 0.83 -1.8 996,842 + -1.4 996,909 + -2.5 996,909 + +0.1 996,909 + -0.6 996,910 - -0.4 996,910 - +1.0 996,910 - +0.2 996,910 - +0.4 996,910 - +0.8 996,910 - -0.5 996,910 - +0.7 996,910 - -0.2 996,917 + -0.3 997,753 - +0.7 997,769 - -0.3 997,772 - -2.2 997,772 - -0.6 997,892 - yifL MCAODC_04940 0.61 -0.0 997,935 - yifL MCAODC_04940 0.82 -1.7 997,935 - yifL MCAODC_04940 0.82 -0.4 997,938 + yifL MCAODC_04940 0.84 -1.7 997,939 - yifL MCAODC_04940 0.84 -0.5 997,939 - yifL MCAODC_04940 0.84 -2.3 997,939 - yifL MCAODC_04940 0.84 -0.0 997,939 - yifL MCAODC_04940 0.84 -1.9 997,941 + yifL MCAODC_04940 0.85 -1.1 997,984 + -0.4 997,984 + -1.2 998,008 + +0.2 998,008 + -0.4 998,009 - +0.6 998,028 + -0.4 998,029 - +1.5 998,029 - -0.6 998,053 + -1.7 998,054 - +0.1 998,054 - +1.5 998,086 + -0.4 998,086 + -1.1 998,087 - -0.5 998,088 + -0.1 998,095 + -0.1 998,095 + +1.1 998,096 - -2.1 998,109 + +0.0 998,109 + -1.7 998,109 + -2.7 998,110 - -0.1 998,110 - +2.2 998,110 - -0.4 998,110 - +0.1 998,110 - -1.0 998,158 + +0.5 998,165 + +0.7 998,240 - -1.2 998,240 - +0.2 998,240 - +0.4 998,240 - +0.5 998,240 - -0.8 998,273 - -2.7 998,273 - -1.4 998,283 + -0.5 998,306 + -0.2 998,307 - +0.7 998,323 - +0.9 998,323 - -0.0 998,323 - +0.6 998,397 + -2.4 998,398 - -0.8 998,398 - +0.6 998,399 + +0.5 998,399 + +0.1 998,416 - -2.5 998,426 + +2.4 998,426 + +0.6 998,427 - +0.5 998,555 + cyaY MCAODC_04945 0.38 -0.8 998,555 + cyaY MCAODC_04945 0.38 -0.2 998,556 - cyaY MCAODC_04945 0.38 -1.9 998,556 - cyaY MCAODC_04945 0.38 +0.9 998,583 - cyaY MCAODC_04945 0.47 -1.0 998,611 + cyaY MCAODC_04945 0.55 +0.7 998,811 + -0.5 998,811 + -0.3 998,811 + +0.1 998,812 - -1.5 998,812 - -0.5 998,812 - +0.2 998,812 - +0.7 998,812 - +0.6 998,812 - +0.9 998,812 - -0.9 998,822 + +0.5 998,914 + +0.2
Or see this region's nucleotide sequence