Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbp and pfkA are separated by 318 nucleotides pfkA and fieF are separated by 180 nucleotides
MCAODC_04320: sbp - sulfate/thiosulfate ABC transporter substrate-binding protein Sbp, at 876,370 to 877,359
sbp
MCAODC_04330: pfkA - 6-phosphofructokinase, at 877,678 to 878,640
pfkA
MCAODC_04335: fieF - CDF family cation-efflux transporter FieF, at 878,821 to 879,723
fieF
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.684 kb on + strand, within sbp at 876.739 kb on + strand, within sbp at 876.771 kb on + strand, within sbp at 876.814 kb on - strand, within sbp at 876.816 kb on - strand, within sbp at 876.894 kb on - strand, within sbp at 876.894 kb on - strand, within sbp at 876.954 kb on + strand, within sbp at 876.955 kb on - strand, within sbp at 876.997 kb on - strand, within sbp at 877.000 kb on + strand, within sbp at 877.000 kb on + strand, within sbp at 877.001 kb on - strand, within sbp at 877.001 kb on - strand, within sbp at 877.025 kb on + strand, within sbp at 877.065 kb on + strand, within sbp at 877.103 kb on + strand, within sbp at 877.104 kb on - strand, within sbp at 877.201 kb on - strand, within sbp at 877.244 kb on + strand, within sbp at 877.244 kb on + strand, within sbp at 877.245 kb on - strand, within sbp at 877.245 kb on - strand, within sbp at 877.245 kb on - strand, within sbp at 877.245 kb on - strand, within sbp at 877.274 kb on + strand at 877.274 kb on + strand at 877.284 kb on + strand at 877.296 kb on + strand at 877.297 kb on - strand at 877.308 kb on + strand at 877.342 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.373 kb on + strand at 877.374 kb on - strand at 877.374 kb on - strand at 877.374 kb on - strand at 877.374 kb on - strand at 877.374 kb on - strand at 877.374 kb on - strand at 877.374 kb on - strand at 877.459 kb on - strand at 877.496 kb on + strand at 877.497 kb on - strand at 877.497 kb on - strand at 877.603 kb on + strand at 877.679 kb on + strand at 877.680 kb on - strand at 877.781 kb on - strand, within pfkA at 877.783 kb on - strand, within pfkA at 878.443 kb on - strand, within pfkA at 878.482 kb on + strand, within pfkA at 878.526 kb on - strand, within pfkA at 878.536 kb on + strand, within pfkA at 878.727 kb on - strand at 878.727 kb on - strand at 878.727 kb on - strand at 878.730 kb on - strand at 878.731 kb on + strand at 878.732 kb on - strand at 878.784 kb on - strand at 878.814 kb on - strand at 878.814 kb on - strand at 878.822 kb on + strand at 878.823 kb on - strand at 878.823 kb on - strand at 878.832 kb on + strand at 878.833 kb on - strand at 878.833 kb on - strand at 878.850 kb on + strand at 878.850 kb on + strand at 878.851 kb on - strand at 878.851 kb on - strand at 878.880 kb on + strand at 878.914 kb on - strand, within fieF at 878.924 kb on - strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 879.095 kb on - strand, within fieF at 879.118 kb on + strand, within fieF at 879.119 kb on - strand, within fieF at 879.128 kb on + strand, within fieF at 879.147 kb on + strand, within fieF at 879.148 kb on - strand, within fieF at 879.150 kb on - strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.158 kb on + strand, within fieF at 879.159 kb on - strand, within fieF at 879.159 kb on - strand, within fieF at 879.207 kb on - strand, within fieF at 879.249 kb on + strand, within fieF at 879.250 kb on - strand, within fieF at 879.263 kb on + strand, within fieF at 879.263 kb on + strand, within fieF at 879.263 kb on + strand, within fieF at 879.263 kb on + strand, within fieF at 879.264 kb on - strand, within fieF at 879.264 kb on - strand, within fieF at 879.264 kb on - strand, within fieF at 879.264 kb on - strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.274 kb on - strand, within fieF at 879.350 kb on - strand, within fieF at 879.407 kb on - strand, within fieF at 879.439 kb on + strand, within fieF at 879.439 kb on + strand, within fieF at 879.439 kb on + strand, within fieF at 879.457 kb on - strand, within fieF at 879.457 kb on - strand, within fieF at 879.462 kb on + strand, within fieF at 879.462 kb on + strand, within fieF at 879.462 kb on + strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.609 kb on + strand, within fieF at 879.610 kb on - strand, within fieF at 879.625 kb on - strand, within fieF at 879.625 kb on - strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.627 kb on - strand, within fieF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 876,684 + sbp MCAODC_04320 0.32 -0.8 876,739 + sbp MCAODC_04320 0.37 -0.1 876,771 + sbp MCAODC_04320 0.41 -2.8 876,814 - sbp MCAODC_04320 0.45 -1.2 876,816 - sbp MCAODC_04320 0.45 +0.8 876,894 - sbp MCAODC_04320 0.53 -0.3 876,894 - sbp MCAODC_04320 0.53 +0.2 876,954 + sbp MCAODC_04320 0.59 +1.1 876,955 - sbp MCAODC_04320 0.59 -1.3 876,997 - sbp MCAODC_04320 0.63 -1.5 877,000 + sbp MCAODC_04320 0.64 -0.3 877,000 + sbp MCAODC_04320 0.64 -2.3 877,001 - sbp MCAODC_04320 0.64 +0.9 877,001 - sbp MCAODC_04320 0.64 -1.1 877,025 + sbp MCAODC_04320 0.66 +0.9 877,065 + sbp MCAODC_04320 0.70 -3.4 877,103 + sbp MCAODC_04320 0.74 +0.7 877,104 - sbp MCAODC_04320 0.74 -1.8 877,201 - sbp MCAODC_04320 0.84 -0.5 877,244 + sbp MCAODC_04320 0.88 +0.4 877,244 + sbp MCAODC_04320 0.88 -1.2 877,245 - sbp MCAODC_04320 0.88 +0.0 877,245 - sbp MCAODC_04320 0.88 -1.4 877,245 - sbp MCAODC_04320 0.88 +1.0 877,245 - sbp MCAODC_04320 0.88 -2.5 877,274 + -0.2 877,274 + +1.1 877,284 + -1.6 877,296 + +0.8 877,297 - +0.2 877,308 + +1.2 877,342 + +0.0 877,373 + +0.7 877,373 + -3.7 877,373 + +0.3 877,373 + +0.5 877,373 + +1.0 877,373 + -1.5 877,373 + +0.5 877,373 + -0.2 877,374 - -0.4 877,374 - -0.0 877,374 - +0.4 877,374 - +0.6 877,374 - -1.3 877,374 - -0.1 877,374 - -0.5 877,459 - +0.8 877,496 + +0.5 877,497 - +0.1 877,497 - +1.4 877,603 + +0.3 877,679 + -0.4 877,680 - +0.7 877,781 - pfkA MCAODC_04330 0.11 -2.0 877,783 - pfkA MCAODC_04330 0.11 -2.2 878,443 - pfkA MCAODC_04330 0.79 -0.9 878,482 + pfkA MCAODC_04330 0.83 -0.0 878,526 - pfkA MCAODC_04330 0.88 -2.1 878,536 + pfkA MCAODC_04330 0.89 +1.7 878,727 - -0.8 878,727 - +0.0 878,727 - +0.1 878,730 - +0.6 878,731 + -0.4 878,732 - -2.3 878,784 - -0.2 878,814 - -1.4 878,814 - +0.2 878,822 + -0.3 878,823 - -0.1 878,823 - -2.5 878,832 + +0.3 878,833 - -1.1 878,833 - -1.3 878,850 + -0.0 878,850 + +0.6 878,851 - -0.8 878,851 - -1.9 878,880 + -0.9 878,914 - fieF MCAODC_04335 0.10 -0.1 878,924 - fieF MCAODC_04335 0.11 +0.4 878,940 + fieF MCAODC_04335 0.13 +0.5 878,940 + fieF MCAODC_04335 0.13 +1.3 878,940 + fieF MCAODC_04335 0.13 +0.1 878,940 + fieF MCAODC_04335 0.13 +0.2 878,940 + fieF MCAODC_04335 0.13 -0.1 878,940 + fieF MCAODC_04335 0.13 -0.9 878,940 + fieF MCAODC_04335 0.13 -1.4 878,940 + fieF MCAODC_04335 0.13 -0.3 878,940 + fieF MCAODC_04335 0.13 +0.1 878,941 - fieF MCAODC_04335 0.13 +0.0 878,941 - fieF MCAODC_04335 0.13 -0.5 878,941 - fieF MCAODC_04335 0.13 +0.5 878,941 - fieF MCAODC_04335 0.13 +0.3 878,941 - fieF MCAODC_04335 0.13 -0.6 878,941 - fieF MCAODC_04335 0.13 -1.4 878,941 - fieF MCAODC_04335 0.13 +0.3 879,095 - fieF MCAODC_04335 0.30 -0.0 879,118 + fieF MCAODC_04335 0.33 -2.0 879,119 - fieF MCAODC_04335 0.33 -0.8 879,128 + fieF MCAODC_04335 0.34 +1.8 879,147 + fieF MCAODC_04335 0.36 +0.2 879,148 - fieF MCAODC_04335 0.36 +0.3 879,150 - fieF MCAODC_04335 0.36 +0.9 879,151 + fieF MCAODC_04335 0.37 +0.2 879,151 + fieF MCAODC_04335 0.37 +1.8 879,151 + fieF MCAODC_04335 0.37 -0.3 879,151 + fieF MCAODC_04335 0.37 +0.4 879,151 + fieF MCAODC_04335 0.37 -0.0 879,152 - fieF MCAODC_04335 0.37 -0.1 879,152 - fieF MCAODC_04335 0.37 +1.7 879,152 - fieF MCAODC_04335 0.37 +1.1 879,152 - fieF MCAODC_04335 0.37 -0.7 879,152 - fieF MCAODC_04335 0.37 -0.1 879,158 + fieF MCAODC_04335 0.37 -1.9 879,159 - fieF MCAODC_04335 0.37 -0.7 879,159 - fieF MCAODC_04335 0.37 +0.6 879,207 - fieF MCAODC_04335 0.43 -3.5 879,249 + fieF MCAODC_04335 0.47 -2.5 879,250 - fieF MCAODC_04335 0.48 -2.6 879,263 + fieF MCAODC_04335 0.49 +0.8 879,263 + fieF MCAODC_04335 0.49 +0.9 879,263 + fieF MCAODC_04335 0.49 -0.2 879,263 + fieF MCAODC_04335 0.49 +1.1 879,264 - fieF MCAODC_04335 0.49 -0.1 879,264 - fieF MCAODC_04335 0.49 -1.4 879,264 - fieF MCAODC_04335 0.49 +0.0 879,264 - fieF MCAODC_04335 0.49 +0.3 879,268 + fieF MCAODC_04335 0.50 -1.3 879,268 + fieF MCAODC_04335 0.50 -1.1 879,268 + fieF MCAODC_04335 0.50 +0.1 879,268 + fieF MCAODC_04335 0.50 +0.1 879,268 + fieF MCAODC_04335 0.50 -0.0 879,268 + fieF MCAODC_04335 0.50 +0.2 879,268 + fieF MCAODC_04335 0.50 -0.6 879,268 + fieF MCAODC_04335 0.50 -0.4 879,268 + fieF MCAODC_04335 0.50 -0.3 879,268 + fieF MCAODC_04335 0.50 -0.6 879,268 + fieF MCAODC_04335 0.50 -0.3 879,268 + fieF MCAODC_04335 0.50 -0.1 879,268 + fieF MCAODC_04335 0.50 +0.3 879,268 + fieF MCAODC_04335 0.50 +0.1 879,268 + fieF MCAODC_04335 0.50 -0.0 879,268 + fieF MCAODC_04335 0.50 +0.8 879,268 + fieF MCAODC_04335 0.50 +0.5 879,268 + fieF MCAODC_04335 0.50 -0.2 879,268 + fieF MCAODC_04335 0.50 +0.1 879,269 - fieF MCAODC_04335 0.50 -1.1 879,269 - fieF MCAODC_04335 0.50 +1.1 879,269 - fieF MCAODC_04335 0.50 +0.7 879,269 - fieF MCAODC_04335 0.50 +0.1 879,269 - fieF MCAODC_04335 0.50 +1.1 879,269 - fieF MCAODC_04335 0.50 +0.8 879,269 - fieF MCAODC_04335 0.50 +1.6 879,269 - fieF MCAODC_04335 0.50 +0.8 879,269 - fieF MCAODC_04335 0.50 -0.3 879,269 - fieF MCAODC_04335 0.50 +1.5 879,269 - fieF MCAODC_04335 0.50 +0.2 879,269 - fieF MCAODC_04335 0.50 +0.2 879,269 - fieF MCAODC_04335 0.50 -1.4 879,269 - fieF MCAODC_04335 0.50 +0.2 879,274 - fieF MCAODC_04335 0.50 +1.1 879,350 - fieF MCAODC_04335 0.59 -0.1 879,407 - fieF MCAODC_04335 0.65 -0.5 879,439 + fieF MCAODC_04335 0.68 +0.4 879,439 + fieF MCAODC_04335 0.68 +1.0 879,439 + fieF MCAODC_04335 0.68 +0.2 879,457 - fieF MCAODC_04335 0.70 -0.6 879,457 - fieF MCAODC_04335 0.70 -0.5 879,462 + fieF MCAODC_04335 0.71 +1.3 879,462 + fieF MCAODC_04335 0.71 +1.6 879,462 + fieF MCAODC_04335 0.71 -0.4 879,463 - fieF MCAODC_04335 0.71 -0.1 879,463 - fieF MCAODC_04335 0.71 -1.5 879,463 - fieF MCAODC_04335 0.71 -0.7 879,463 - fieF MCAODC_04335 0.71 -0.2 879,463 - fieF MCAODC_04335 0.71 -2.4 879,463 - fieF MCAODC_04335 0.71 -0.4 879,463 - fieF MCAODC_04335 0.71 +0.0 879,463 - fieF MCAODC_04335 0.71 -0.0 879,609 + fieF MCAODC_04335 0.87 -1.8 879,610 - fieF MCAODC_04335 0.87 +0.1 879,625 - fieF MCAODC_04335 0.89 -1.8 879,625 - fieF MCAODC_04335 0.89 +0.1 879,626 + fieF MCAODC_04335 0.89 -0.3 879,626 + fieF MCAODC_04335 0.89 +0.3 879,626 + fieF MCAODC_04335 0.89 -0.1 879,626 + fieF MCAODC_04335 0.89 +0.5 879,627 - fieF MCAODC_04335 0.89 -1.9
Or see this region's nucleotide sequence