Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and prfC are separated by 392 nucleotides prfC and yjjG are separated by 63 nucleotides yjjG and rimI are separated by 14 nucleotides
MCAODC_01790: osmY - molecular chaperone OsmY, at 345,594 to 346,199
osmY
MCAODC_01795: prfC - peptide chain release factor 3, at 346,592 to 348,208
prfC
MCAODC_01800: yjjG - pyrimidine 5'-nucleotidase, at 348,272 to 348,949
yjjG
MCAODC_01805: rimI - ribosomal protein S18-alanine N-acetyltransferase, at 348,964 to 349,410
rimI
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 345.596 kb on - strand at 345.596 kb on - strand at 345.596 kb on - strand at 345.637 kb on - strand at 345.637 kb on - strand at 345.637 kb on - strand at 345.651 kb on - strand at 345.684 kb on + strand, within osmY at 345.684 kb on + strand, within osmY at 345.685 kb on - strand, within osmY at 345.968 kb on + strand, within osmY at 346.055 kb on + strand, within osmY at 346.055 kb on + strand, within osmY at 346.055 kb on + strand, within osmY at 346.056 kb on - strand, within osmY at 346.061 kb on + strand, within osmY at 346.155 kb on + strand at 346.156 kb on - strand at 346.193 kb on + strand at 346.193 kb on + strand at 346.193 kb on + strand at 346.193 kb on + strand at 346.193 kb on + strand at 346.213 kb on + strand at 346.213 kb on + strand at 346.213 kb on + strand at 346.214 kb on - strand at 346.214 kb on - strand at 346.214 kb on - strand at 346.283 kb on - strand at 346.283 kb on - strand at 346.283 kb on - strand at 346.326 kb on + strand at 346.326 kb on + strand at 346.336 kb on + strand at 346.337 kb on - strand at 346.354 kb on + strand at 346.357 kb on + strand at 346.357 kb on + strand at 346.387 kb on + strand at 346.387 kb on + strand at 346.388 kb on - strand at 346.388 kb on - strand at 346.392 kb on - strand at 346.392 kb on - strand at 346.397 kb on + strand at 346.397 kb on + strand at 346.398 kb on - strand at 346.402 kb on - strand at 346.402 kb on - strand at 346.402 kb on - strand at 346.454 kb on + strand at 346.454 kb on + strand at 346.516 kb on - strand at 346.536 kb on + strand at 346.540 kb on - strand at 346.594 kb on - strand at 346.594 kb on - strand at 346.674 kb on + strand at 346.675 kb on - strand at 346.760 kb on + strand, within prfC at 346.760 kb on + strand, within prfC at 346.794 kb on + strand, within prfC at 346.794 kb on + strand, within prfC at 346.794 kb on + strand, within prfC at 346.794 kb on + strand, within prfC at 346.795 kb on - strand, within prfC at 346.812 kb on + strand, within prfC at 346.932 kb on - strand, within prfC at 347.015 kb on - strand, within prfC at 347.208 kb on + strand, within prfC at 347.209 kb on - strand, within prfC at 347.209 kb on - strand, within prfC at 347.209 kb on - strand, within prfC at 347.209 kb on - strand, within prfC at 347.231 kb on - strand, within prfC at 347.283 kb on - strand, within prfC at 347.315 kb on + strand, within prfC at 347.315 kb on + strand, within prfC at 347.380 kb on + strand, within prfC at 347.561 kb on - strand, within prfC at 347.593 kb on + strand, within prfC at 347.605 kb on - strand, within prfC at 347.610 kb on + strand, within prfC at 347.610 kb on + strand, within prfC at 347.611 kb on - strand, within prfC at 347.611 kb on - strand, within prfC at 347.626 kb on - strand, within prfC at 347.626 kb on - strand, within prfC at 347.634 kb on + strand, within prfC at 347.762 kb on - strand, within prfC at 347.810 kb on - strand, within prfC at 347.883 kb on + strand, within prfC at 347.883 kb on + strand, within prfC at 347.884 kb on - strand, within prfC at 347.884 kb on - strand, within prfC at 347.884 kb on - strand, within prfC at 347.884 kb on - strand, within prfC at 347.884 kb on - strand, within prfC at 347.887 kb on + strand, within prfC at 347.887 kb on + strand, within prfC at 347.888 kb on - strand, within prfC at 347.888 kb on - strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.968 kb on + strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.969 kb on - strand, within prfC at 347.971 kb on + strand, within prfC at 347.971 kb on + strand, within prfC at 347.972 kb on - strand, within prfC at 347.972 kb on - strand, within prfC at 348.016 kb on + strand, within prfC at 348.044 kb on + strand, within prfC at 348.044 kb on + strand, within prfC at 348.045 kb on - strand, within prfC at 348.100 kb on + strand at 348.100 kb on + strand at 348.100 kb on + strand at 348.127 kb on + strand at 348.165 kb on + strand at 348.165 kb on + strand at 348.166 kb on - strand at 348.182 kb on - strand at 348.182 kb on - strand at 348.182 kb on - strand at 348.244 kb on - strand at 348.248 kb on + strand at 348.280 kb on + strand at 348.280 kb on + strand at 348.281 kb on - strand at 348.281 kb on - strand at 348.281 kb on - strand at 348.494 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.544 kb on - strand, within yjjG at 348.589 kb on + strand, within yjjG at 348.688 kb on + strand, within yjjG at 348.688 kb on + strand, within yjjG at 348.688 kb on + strand, within yjjG at 348.691 kb on + strand, within yjjG at 348.692 kb on - strand, within yjjG at 348.692 kb on - strand, within yjjG at 348.692 kb on - strand, within yjjG at 348.709 kb on + strand, within yjjG at 348.710 kb on - strand, within yjjG at 348.710 kb on - strand, within yjjG at 348.768 kb on - strand, within yjjG at 348.768 kb on - strand, within yjjG at 348.826 kb on - strand, within yjjG at 348.826 kb on - strand, within yjjG at 348.847 kb on + strand, within yjjG at 348.862 kb on - strand, within yjjG at 348.904 kb on + strand at 348.904 kb on + strand at 348.950 kb on + strand at 348.951 kb on - strand at 348.965 kb on + strand at 348.965 kb on + strand at 348.965 kb on + strand at 348.966 kb on - strand at 348.966 kb on - strand at 348.966 kb on - strand at 348.969 kb on + strand at 348.970 kb on - strand at 349.025 kb on + strand, within rimI at 349.026 kb on - strand, within rimI at 349.026 kb on - strand, within rimI at 349.026 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.112 kb on - strand, within rimI at 349.187 kb on + strand, within rimI at 349.188 kb on - strand, within rimI at 349.188 kb on - strand, within rimI at 349.188 kb on - strand, within rimI at 349.206 kb on + strand, within rimI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 345,596 - -0.1 345,596 - +0.1 345,596 - +0.4 345,637 - +1.1 345,637 - -0.6 345,637 - +0.0 345,651 - +0.4 345,684 + osmY MCAODC_01790 0.15 +0.1 345,684 + osmY MCAODC_01790 0.15 +0.2 345,685 - osmY MCAODC_01790 0.15 -0.5 345,968 + osmY MCAODC_01790 0.62 +0.4 346,055 + osmY MCAODC_01790 0.76 +0.2 346,055 + osmY MCAODC_01790 0.76 +0.1 346,055 + osmY MCAODC_01790 0.76 -0.3 346,056 - osmY MCAODC_01790 0.76 -0.0 346,061 + osmY MCAODC_01790 0.77 +0.3 346,155 + +0.5 346,156 - -0.5 346,193 + -0.6 346,193 + +0.0 346,193 + +0.2 346,193 + +0.0 346,193 + +0.1 346,213 + -1.1 346,213 + -0.3 346,213 + +0.5 346,214 - -0.9 346,214 - +0.8 346,214 - -1.0 346,283 - +2.0 346,283 - -0.9 346,283 - -0.6 346,326 + -0.4 346,326 + -0.4 346,336 + -3.4 346,337 - +0.0 346,354 + -0.3 346,357 + -1.5 346,357 + +0.5 346,387 + +0.2 346,387 + -0.3 346,388 - -0.4 346,388 - -1.8 346,392 - -0.5 346,392 - +0.6 346,397 + -0.6 346,397 + -0.2 346,398 - +0.4 346,402 - +0.8 346,402 - +0.2 346,402 - +0.0 346,454 + -1.6 346,454 + +2.1 346,516 - +0.7 346,536 + -0.6 346,540 - -0.4 346,594 - -0.5 346,594 - -0.0 346,674 + +0.2 346,675 - -1.2 346,760 + prfC MCAODC_01795 0.10 -1.9 346,760 + prfC MCAODC_01795 0.10 -0.5 346,794 + prfC MCAODC_01795 0.12 +0.9 346,794 + prfC MCAODC_01795 0.12 -1.3 346,794 + prfC MCAODC_01795 0.12 -0.8 346,794 + prfC MCAODC_01795 0.12 -2.7 346,795 - prfC MCAODC_01795 0.13 -0.3 346,812 + prfC MCAODC_01795 0.14 -1.6 346,932 - prfC MCAODC_01795 0.21 -1.9 347,015 - prfC MCAODC_01795 0.26 -1.9 347,208 + prfC MCAODC_01795 0.38 -3.1 347,209 - prfC MCAODC_01795 0.38 +0.5 347,209 - prfC MCAODC_01795 0.38 +1.1 347,209 - prfC MCAODC_01795 0.38 -1.6 347,209 - prfC MCAODC_01795 0.38 -2.7 347,231 - prfC MCAODC_01795 0.40 +0.5 347,283 - prfC MCAODC_01795 0.43 -0.9 347,315 + prfC MCAODC_01795 0.45 -0.2 347,315 + prfC MCAODC_01795 0.45 -0.3 347,380 + prfC MCAODC_01795 0.49 -1.6 347,561 - prfC MCAODC_01795 0.60 -0.5 347,593 + prfC MCAODC_01795 0.62 -1.2 347,605 - prfC MCAODC_01795 0.63 +0.1 347,610 + prfC MCAODC_01795 0.63 -2.1 347,610 + prfC MCAODC_01795 0.63 +0.9 347,611 - prfC MCAODC_01795 0.63 +0.0 347,611 - prfC MCAODC_01795 0.63 +2.3 347,626 - prfC MCAODC_01795 0.64 +0.1 347,626 - prfC MCAODC_01795 0.64 +0.5 347,634 + prfC MCAODC_01795 0.64 -1.1 347,762 - prfC MCAODC_01795 0.72 -1.2 347,810 - prfC MCAODC_01795 0.75 +0.4 347,883 + prfC MCAODC_01795 0.80 -2.5 347,883 + prfC MCAODC_01795 0.80 -0.3 347,884 - prfC MCAODC_01795 0.80 -1.9 347,884 - prfC MCAODC_01795 0.80 -1.1 347,884 - prfC MCAODC_01795 0.80 -0.6 347,884 - prfC MCAODC_01795 0.80 -2.9 347,884 - prfC MCAODC_01795 0.80 -0.1 347,887 + prfC MCAODC_01795 0.80 -2.2 347,887 + prfC MCAODC_01795 0.80 -3.0 347,888 - prfC MCAODC_01795 0.80 +0.6 347,888 - prfC MCAODC_01795 0.80 -4.0 347,968 + prfC MCAODC_01795 0.85 -1.7 347,968 + prfC MCAODC_01795 0.85 +0.1 347,968 + prfC MCAODC_01795 0.85 -2.1 347,968 + prfC MCAODC_01795 0.85 -2.2 347,968 + prfC MCAODC_01795 0.85 -0.7 347,969 - prfC MCAODC_01795 0.85 -2.0 347,969 - prfC MCAODC_01795 0.85 -0.8 347,969 - prfC MCAODC_01795 0.85 -0.2 347,969 - prfC MCAODC_01795 0.85 -2.2 347,969 - prfC MCAODC_01795 0.85 -1.1 347,971 + prfC MCAODC_01795 0.85 -1.4 347,971 + prfC MCAODC_01795 0.85 +1.2 347,972 - prfC MCAODC_01795 0.85 -2.1 347,972 - prfC MCAODC_01795 0.85 -1.7 348,016 + prfC MCAODC_01795 0.88 -1.0 348,044 + prfC MCAODC_01795 0.90 -0.2 348,044 + prfC MCAODC_01795 0.90 +2.0 348,045 - prfC MCAODC_01795 0.90 -1.4 348,100 + -0.3 348,100 + -1.0 348,100 + -2.8 348,127 + -2.0 348,165 + +1.5 348,165 + -0.4 348,166 - -0.8 348,182 - -0.0 348,182 - -0.6 348,182 - +1.1 348,244 - +0.4 348,248 + -0.9 348,280 + +0.1 348,280 + -0.2 348,281 - +0.1 348,281 - -0.5 348,281 - +0.3 348,494 - yjjG MCAODC_01800 0.33 -1.0 348,544 - yjjG MCAODC_01800 0.40 +0.0 348,544 - yjjG MCAODC_01800 0.40 +0.9 348,544 - yjjG MCAODC_01800 0.40 -2.4 348,544 - yjjG MCAODC_01800 0.40 +0.3 348,589 + yjjG MCAODC_01800 0.47 +0.2 348,688 + yjjG MCAODC_01800 0.61 -0.2 348,688 + yjjG MCAODC_01800 0.61 -1.1 348,688 + yjjG MCAODC_01800 0.61 +0.3 348,691 + yjjG MCAODC_01800 0.62 -0.1 348,692 - yjjG MCAODC_01800 0.62 +0.3 348,692 - yjjG MCAODC_01800 0.62 -0.2 348,692 - yjjG MCAODC_01800 0.62 +1.6 348,709 + yjjG MCAODC_01800 0.64 -0.4 348,710 - yjjG MCAODC_01800 0.65 -3.4 348,710 - yjjG MCAODC_01800 0.65 -0.0 348,768 - yjjG MCAODC_01800 0.73 -0.3 348,768 - yjjG MCAODC_01800 0.73 -0.9 348,826 - yjjG MCAODC_01800 0.82 -0.2 348,826 - yjjG MCAODC_01800 0.82 -0.9 348,847 + yjjG MCAODC_01800 0.85 -0.9 348,862 - yjjG MCAODC_01800 0.87 -0.2 348,904 + -0.5 348,904 + -0.1 348,950 + -0.6 348,951 - +0.6 348,965 + +0.3 348,965 + +0.0 348,965 + +0.5 348,966 - +3.7 348,966 - -1.3 348,966 - +0.1 348,969 + -0.7 348,970 - +0.2 349,025 + rimI MCAODC_01805 0.14 -0.4 349,026 - rimI MCAODC_01805 0.14 -0.9 349,026 - rimI MCAODC_01805 0.14 -0.1 349,026 - rimI MCAODC_01805 0.14 +1.0 349,112 - rimI MCAODC_01805 0.33 +0.4 349,112 - rimI MCAODC_01805 0.33 -1.6 349,112 - rimI MCAODC_01805 0.33 +0.1 349,112 - rimI MCAODC_01805 0.33 +0.1 349,187 + rimI MCAODC_01805 0.50 +1.2 349,188 - rimI MCAODC_01805 0.50 -1.8 349,188 - rimI MCAODC_01805 0.50 +0.7 349,188 - rimI MCAODC_01805 0.50 -0.0 349,206 + rimI MCAODC_01805 0.54 -0.3
Or see this region's nucleotide sequence