Strain Fitness in Escherichia coli ECRC101 around MCAODC_18700

Experiment: WM_Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmipA and yeaG are separated by 435 nucleotidesyeaG and yeaH are separated by 112 nucleotides MCAODC_18695: mipA - scaffolding protein MipA, at 596,599 to 597,345 mipA MCAODC_18700: yeaG - protein kinase YeaG, at 597,781 to 599,715 yeaG MCAODC_18705: yeaH - UPF0229 protein YeaH, at 599,828 to 601,111 yeaH Position (kb) 597 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 596.781 kb on - strand, within mipAat 596.826 kb on - strand, within mipAat 596.826 kb on - strand, within mipAat 596.826 kb on - strand, within mipAat 596.828 kb on + strand, within mipAat 596.829 kb on - strand, within mipAat 596.829 kb on - strand, within mipAat 596.829 kb on - strand, within mipAat 596.832 kb on - strand, within mipAat 596.832 kb on - strand, within mipAat 596.832 kb on - strand, within mipAat 596.832 kb on - strand, within mipAat 596.901 kb on - strand, within mipAat 596.953 kb on - strand, within mipAat 596.985 kb on - strand, within mipAat 597.002 kb on + strand, within mipAat 597.003 kb on - strand, within mipAat 597.031 kb on - strand, within mipAat 597.031 kb on - strand, within mipAat 597.031 kb on - strand, within mipAat 597.084 kb on - strand, within mipAat 597.084 kb on - strand, within mipAat 597.106 kb on - strand, within mipAat 597.118 kb on - strand, within mipAat 597.140 kb on + strand, within mipAat 597.141 kb on - strand, within mipAat 597.141 kb on - strand, within mipAat 597.141 kb on - strand, within mipAat 597.141 kb on - strand, within mipAat 597.144 kb on - strand, within mipAat 597.144 kb on - strand, within mipAat 597.186 kb on - strand, within mipAat 597.186 kb on - strand, within mipAat 597.186 kb on - strand, within mipAat 597.229 kb on - strand, within mipAat 597.231 kb on - strand, within mipAat 597.251 kb on - strand, within mipAat 597.350 kb on - strandat 597.400 kb on - strandat 597.519 kb on + strandat 597.528 kb on + strandat 597.556 kb on + strandat 597.557 kb on - strandat 597.607 kb on + strandat 597.607 kb on + strandat 597.607 kb on + strandat 597.627 kb on + strandat 597.628 kb on - strandat 597.728 kb on + strandat 597.728 kb on + strandat 597.757 kb on + strandat 597.940 kb on - strandat 598.099 kb on + strand, within yeaGat 598.356 kb on + strand, within yeaGat 598.356 kb on + strand, within yeaGat 598.630 kb on + strand, within yeaGat 599.090 kb on + strand, within yeaGat 599.090 kb on + strand, within yeaGat 599.091 kb on - strand, within yeaGat 599.122 kb on + strand, within yeaGat 599.122 kb on + strand, within yeaGat 599.201 kb on - strand, within yeaGat 599.252 kb on - strand, within yeaGat 599.301 kb on + strand, within yeaGat 599.703 kb on + strandat 599.703 kb on + strandat 599.704 kb on - strandat 599.798 kb on + strandat 599.798 kb on + strandat 599.798 kb on + strandat 599.798 kb on + strandat 599.799 kb on - strandat 599.799 kb on - strandat 599.827 kb on + strandat 599.827 kb on + strandat 599.828 kb on - strandat 599.840 kb on - strandat 599.904 kb on - strandat 599.905 kb on + strandat 599.906 kb on - strandat 600.272 kb on - strand, within yeaHat 600.292 kb on + strand, within yeaHat 600.483 kb on + strand, within yeaHat 600.483 kb on + strand, within yeaHat 600.529 kb on - strand, within yeaHat 600.543 kb on - strand, within yeaHat 600.657 kb on - strand, within yeaHat 600.678 kb on - strand, within yeaHat 600.679 kb on + strand, within yeaHat 600.698 kb on + strand, within yeaHat 600.698 kb on + strand, within yeaHat 600.698 kb on + strand, within yeaHat 600.712 kb on + strand, within yeaHat 600.713 kb on - strand, within yeaH

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas14
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596,781 - mipA MCAODC_18695 0.24 -0.1
596,826 - mipA MCAODC_18695 0.30 +0.3
596,826 - mipA MCAODC_18695 0.30 -0.6
596,826 - mipA MCAODC_18695 0.30 -1.4
596,828 + mipA MCAODC_18695 0.31 +0.4
596,829 - mipA MCAODC_18695 0.31 -1.6
596,829 - mipA MCAODC_18695 0.31 +0.5
596,829 - mipA MCAODC_18695 0.31 +0.0
596,832 - mipA MCAODC_18695 0.31 -0.8
596,832 - mipA MCAODC_18695 0.31 +0.7
596,832 - mipA MCAODC_18695 0.31 -2.0
596,832 - mipA MCAODC_18695 0.31 -0.7
596,901 - mipA MCAODC_18695 0.40 +0.5
596,953 - mipA MCAODC_18695 0.47 -1.0
596,985 - mipA MCAODC_18695 0.52 -0.5
597,002 + mipA MCAODC_18695 0.54 +1.6
597,003 - mipA MCAODC_18695 0.54 -1.1
597,031 - mipA MCAODC_18695 0.58 -1.1
597,031 - mipA MCAODC_18695 0.58 -0.4
597,031 - mipA MCAODC_18695 0.58 -0.3
597,084 - mipA MCAODC_18695 0.65 -0.8
597,084 - mipA MCAODC_18695 0.65 -0.2
597,106 - mipA MCAODC_18695 0.68 +1.0
597,118 - mipA MCAODC_18695 0.69 -0.1
597,140 + mipA MCAODC_18695 0.72 -1.1
597,141 - mipA MCAODC_18695 0.73 -0.2
597,141 - mipA MCAODC_18695 0.73 +0.2
597,141 - mipA MCAODC_18695 0.73 -1.7
597,141 - mipA MCAODC_18695 0.73 +1.8
597,144 - mipA MCAODC_18695 0.73 +1.0
597,144 - mipA MCAODC_18695 0.73 -0.1
597,186 - mipA MCAODC_18695 0.79 +0.6
597,186 - mipA MCAODC_18695 0.79 -0.3
597,186 - mipA MCAODC_18695 0.79 -0.8
597,229 - mipA MCAODC_18695 0.84 +0.5
597,231 - mipA MCAODC_18695 0.85 +0.5
597,251 - mipA MCAODC_18695 0.87 +1.7
597,350 - +0.3
597,400 - -2.2
597,519 + -1.6
597,528 + -0.1
597,556 + +0.5
597,557 - -0.1
597,607 + +0.7
597,607 + +0.5
597,607 + -0.2
597,627 + -0.9
597,628 - +0.2
597,728 + +1.0
597,728 + +0.4
597,757 + +1.4
597,940 - +0.3
598,099 + yeaG MCAODC_18700 0.16 +2.1
598,356 + yeaG MCAODC_18700 0.30 +1.4
598,356 + yeaG MCAODC_18700 0.30 +0.9
598,630 + yeaG MCAODC_18700 0.44 -0.6
599,090 + yeaG MCAODC_18700 0.68 -1.6
599,090 + yeaG MCAODC_18700 0.68 +0.3
599,091 - yeaG MCAODC_18700 0.68 +0.4
599,122 + yeaG MCAODC_18700 0.69 +1.4
599,122 + yeaG MCAODC_18700 0.69 -0.0
599,201 - yeaG MCAODC_18700 0.73 +1.2
599,252 - yeaG MCAODC_18700 0.76 -1.9
599,301 + yeaG MCAODC_18700 0.79 +1.7
599,703 + +0.9
599,703 + +0.5
599,704 - +1.2
599,798 + +1.1
599,798 + -1.3
599,798 + -0.4
599,798 + -0.3
599,799 - +0.9
599,799 - +1.5
599,827 + +1.1
599,827 + +0.8
599,828 - +0.0
599,840 - +0.5
599,904 - +0.8
599,905 + +2.1
599,906 - +0.1
600,272 - yeaH MCAODC_18705 0.35 +1.3
600,292 + yeaH MCAODC_18705 0.36 +1.2
600,483 + yeaH MCAODC_18705 0.51 +1.5
600,483 + yeaH MCAODC_18705 0.51 +0.2
600,529 - yeaH MCAODC_18705 0.55 -0.8
600,543 - yeaH MCAODC_18705 0.56 +0.5
600,657 - yeaH MCAODC_18705 0.65 +0.2
600,678 - yeaH MCAODC_18705 0.66 +0.1
600,679 + yeaH MCAODC_18705 0.66 +1.2
600,698 + yeaH MCAODC_18705 0.68 +1.2
600,698 + yeaH MCAODC_18705 0.68 -0.6
600,698 + yeaH MCAODC_18705 0.68 +0.1
600,712 + yeaH MCAODC_18705 0.69 -1.0
600,713 - yeaH MCAODC_18705 0.69 -0.1

Or see this region's nucleotide sequence