Experiment: WM_TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydeA and marC are separated by 24 nucleotides marC and marR are separated by 211 nucleotides marR and marA are separated by 19 nucleotides marA and marB are separated by 31 nucleotides marB and eamA are separated by 30 nucleotides
MCAODC_16835: ydeA - L-arabinose MFS transporter, at 279,013 to 280,203
ydeA
MCAODC_16840: marC - NAAT family transporter MarC, at 280,228 to 280,893
marC
MCAODC_16845: marR - multiple antibiotic resistance transcriptional regulator MarR, at 281,105 to 281,539
marR
MCAODC_16850: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 281,559 to 281,942
marA
MCAODC_16855: marB - multiple antibiotic resistance protein MarB, at 281,974 to 282,192
marB
MCAODC_16860: eamA - O-acetylserine/cysteine exporter, at 282,223 to 283,122
eamA
Position (kb) 281
282 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 280.111 kb on + strand at 280.145 kb on + strand at 280.158 kb on + strand at 280.158 kb on + strand at 280.160 kb on + strand at 280.270 kb on - strand at 280.285 kb on - strand at 280.285 kb on - strand at 280.285 kb on - strand at 280.351 kb on - strand, within marC at 280.370 kb on - strand, within marC at 280.476 kb on + strand, within marC at 280.476 kb on + strand, within marC at 280.510 kb on - strand, within marC at 280.693 kb on - strand, within marC at 280.774 kb on - strand, within marC at 280.774 kb on - strand, within marC at 280.813 kb on + strand, within marC at 280.814 kb on - strand, within marC at 280.944 kb on + strand at 281.101 kb on + strand at 281.154 kb on + strand, within marR at 281.155 kb on - strand, within marR at 281.167 kb on + strand, within marR at 281.198 kb on + strand, within marR at 281.198 kb on + strand, within marR at 281.215 kb on + strand, within marR at 281.233 kb on + strand, within marR at 281.233 kb on + strand, within marR at 281.266 kb on + strand, within marR at 281.269 kb on + strand, within marR at 281.344 kb on + strand, within marR at 281.397 kb on + strand, within marR at 281.445 kb on + strand, within marR at 281.553 kb on - strand at 281.727 kb on + strand, within marA at 281.728 kb on - strand, within marA at 281.873 kb on + strand, within marA at 281.941 kb on - strand at 281.973 kb on + strand at 281.996 kb on + strand, within marB at 282.173 kb on - strand at 282.174 kb on + strand at 282.175 kb on - strand at 282.175 kb on - strand at 282.191 kb on - strand at 282.191 kb on - strand at 282.191 kb on - strand at 282.193 kb on + strand at 282.193 kb on + strand at 282.193 kb on + strand at 282.194 kb on - strand at 282.196 kb on - strand at 282.233 kb on - strand at 282.276 kb on - strand at 282.377 kb on - strand, within eamA at 282.407 kb on + strand, within eamA at 282.446 kb on - strand, within eamA at 282.446 kb on - strand, within eamA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP15 remove 280,111 + +0.1 280,145 + -1.5 280,158 + +3.9 280,158 + +0.0 280,160 + -0.0 280,270 - +0.2 280,285 - -0.9 280,285 - -0.0 280,285 - +1.3 280,351 - marC MCAODC_16840 0.18 -0.4 280,370 - marC MCAODC_16840 0.21 -0.2 280,476 + marC MCAODC_16840 0.37 -1.3 280,476 + marC MCAODC_16840 0.37 +1.7 280,510 - marC MCAODC_16840 0.42 +0.3 280,693 - marC MCAODC_16840 0.70 -0.2 280,774 - marC MCAODC_16840 0.82 -2.7 280,774 - marC MCAODC_16840 0.82 +0.8 280,813 + marC MCAODC_16840 0.88 -0.7 280,814 - marC MCAODC_16840 0.88 +1.0 280,944 + -1.1 281,101 + +1.7 281,154 + marR MCAODC_16845 0.11 -2.5 281,155 - marR MCAODC_16845 0.11 +0.6 281,167 + marR MCAODC_16845 0.14 -2.5 281,198 + marR MCAODC_16845 0.21 -3.4 281,198 + marR MCAODC_16845 0.21 -1.2 281,215 + marR MCAODC_16845 0.25 -3.8 281,233 + marR MCAODC_16845 0.29 -2.2 281,233 + marR MCAODC_16845 0.29 -1.7 281,266 + marR MCAODC_16845 0.37 -2.1 281,269 + marR MCAODC_16845 0.38 -1.4 281,344 + marR MCAODC_16845 0.55 -2.4 281,397 + marR MCAODC_16845 0.67 -2.9 281,445 + marR MCAODC_16845 0.78 -2.7 281,553 - +0.7 281,727 + marA MCAODC_16850 0.44 +1.7 281,728 - marA MCAODC_16850 0.44 -0.4 281,873 + marA MCAODC_16850 0.82 +0.5 281,941 - -0.9 281,973 + +0.4 281,996 + marB MCAODC_16855 0.10 +0.6 282,173 - +0.1 282,174 + +0.2 282,175 - -0.6 282,175 - -1.1 282,191 - +0.8 282,191 - -1.4 282,191 - +0.4 282,193 + -2.5 282,193 + +0.4 282,193 + +0.1 282,194 - -0.3 282,196 - -0.1 282,233 - -0.2 282,276 - +0.7 282,377 - eamA MCAODC_16860 0.17 -0.9 282,407 + eamA MCAODC_16860 0.20 +0.4 282,446 - eamA MCAODC_16860 0.25 +0.2 282,446 - eamA MCAODC_16860 0.25 -0.8
Or see this region's nucleotide sequence