Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tatD and tatC are separated by 41 nucleotides tatC and tatB are separated by 2 nucleotides tatB and tatA are separated by 3 nucleotides tatA and ubiB are separated by 78 nucleotides
HEPCGN_12900: tatD - 3'-5' ssDNA/RNA exonuclease TatD, at 1,330,912 to 1,331,694
tatD
HEPCGN_12905: tatC - Sec-independent protein translocase subunit TatC, at 1,331,736 to 1,332,512
tatC
HEPCGN_12910: tatB - Sec-independent protein translocase protein TatB, at 1,332,515 to 1,333,030
tatB
HEPCGN_12915: tatA - Sec-independent protein translocase subunit TatA, at 1,333,034 to 1,333,303
tatA
HEPCGN_12920: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,333,382 to 1,335,022
ubiB
Position (kb)
1332
1333
1334 Strain fitness (log2 ratio)
-1
0
1
2 at 1331.632 kb on + strand at 1331.632 kb on + strand at 1331.632 kb on + strand at 1331.632 kb on + strand at 1331.632 kb on + strand at 1331.633 kb on - strand at 1331.699 kb on + strand at 1331.706 kb on + strand at 1331.706 kb on + strand at 1331.738 kb on - strand at 1331.806 kb on + strand at 1331.807 kb on - strand at 1332.524 kb on - strand at 1332.777 kb on - strand, within tatB at 1333.036 kb on - strand at 1333.036 kb on - strand at 1333.049 kb on - strand at 1333.254 kb on - strand, within tatA at 1333.304 kb on - strand at 1333.304 kb on - strand at 1333.304 kb on - strand at 1333.346 kb on + strand at 1333.348 kb on + strand at 1333.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 1,331,632 + -0.1 1,331,632 + +1.8 1,331,632 + -0.2 1,331,632 + -0.8 1,331,632 + -0.5 1,331,633 - +0.4 1,331,699 + -0.0 1,331,706 + +0.6 1,331,706 + -0.7 1,331,738 - +0.3 1,331,806 + -0.7 1,331,807 - -0.1 1,332,524 - +0.2 1,332,777 - tatB HEPCGN_12910 0.51 +1.6 1,333,036 - +2.7 1,333,036 - +0.6 1,333,049 - -1.4 1,333,254 - tatA HEPCGN_12915 0.81 +1.2 1,333,304 - +0.7 1,333,304 - +2.5 1,333,304 - +1.3 1,333,346 + +0.9 1,333,348 + -0.7 1,333,349 - +0.2
Or see this region's nucleotide sequence