Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09655 and HEPCGN_09660 are separated by 6 nucleotides HEPCGN_09660 and mcrC overlap by 8 nucleotides
HEPCGN_09655: HEPCGN_09655 - Restriction endonuclease, at 672,462 to 673,445
_09655
HEPCGN_09660: HEPCGN_09660 - AAA family ATPase, at 673,452 to 674,537
_09660
HEPCGN_09665: mcrC - restriction endonuclease, at 674,530 to 675,873
mcrC
Position (kb) 673
674
675 Strain fitness (log2 ratio) -1
0
1
2 at 672.472 kb on + strand at 672.472 kb on + strand at 672.472 kb on + strand at 672.472 kb on + strand at 672.472 kb on + strand at 672.473 kb on - strand at 672.674 kb on + strand, within HEPCGN_09655 at 672.675 kb on - strand, within HEPCGN_09655 at 672.705 kb on + strand, within HEPCGN_09655 at 672.781 kb on - strand, within HEPCGN_09655 at 672.830 kb on + strand, within HEPCGN_09655 at 672.831 kb on - strand, within HEPCGN_09655 at 672.831 kb on - strand, within HEPCGN_09655 at 672.831 kb on - strand, within HEPCGN_09655 at 672.831 kb on - strand, within HEPCGN_09655 at 672.882 kb on + strand, within HEPCGN_09655 at 673.006 kb on + strand, within HEPCGN_09655 at 673.038 kb on + strand, within HEPCGN_09655 at 673.039 kb on - strand, within HEPCGN_09655 at 673.039 kb on - strand, within HEPCGN_09655 at 673.039 kb on - strand, within HEPCGN_09655 at 673.039 kb on - strand, within HEPCGN_09655 at 673.065 kb on + strand, within HEPCGN_09655 at 673.066 kb on - strand, within HEPCGN_09655 at 673.111 kb on + strand, within HEPCGN_09655 at 673.115 kb on + strand, within HEPCGN_09655 at 673.121 kb on + strand, within HEPCGN_09655 at 673.121 kb on + strand, within HEPCGN_09655 at 673.122 kb on - strand, within HEPCGN_09655 at 673.122 kb on - strand, within HEPCGN_09655 at 673.122 kb on - strand, within HEPCGN_09655 at 673.122 kb on - strand, within HEPCGN_09655 at 673.165 kb on + strand, within HEPCGN_09655 at 673.166 kb on - strand, within HEPCGN_09655 at 673.178 kb on + strand, within HEPCGN_09655 at 673.322 kb on + strand, within HEPCGN_09655 at 673.324 kb on + strand, within HEPCGN_09655 at 673.382 kb on + strand at 673.383 kb on - strand at 673.383 kb on - strand at 673.383 kb on - strand at 673.383 kb on - strand at 673.405 kb on + strand at 673.405 kb on + strand at 673.408 kb on + strand at 673.430 kb on - strand at 673.437 kb on - strand at 673.461 kb on + strand at 673.464 kb on - strand at 673.492 kb on - strand at 673.494 kb on - strand at 673.517 kb on - strand at 673.593 kb on + strand, within HEPCGN_09660 at 673.652 kb on + strand, within HEPCGN_09660 at 673.675 kb on - strand, within HEPCGN_09660 at 673.731 kb on + strand, within HEPCGN_09660 at 673.754 kb on + strand, within HEPCGN_09660 at 673.855 kb on + strand, within HEPCGN_09660 at 673.873 kb on + strand, within HEPCGN_09660 at 673.923 kb on - strand, within HEPCGN_09660 at 673.959 kb on - strand, within HEPCGN_09660 at 673.976 kb on + strand, within HEPCGN_09660 at 673.993 kb on + strand, within HEPCGN_09660 at 673.994 kb on - strand, within HEPCGN_09660 at 674.060 kb on - strand, within HEPCGN_09660 at 674.104 kb on + strand, within HEPCGN_09660 at 674.105 kb on - strand, within HEPCGN_09660 at 674.150 kb on + strand, within HEPCGN_09660 at 674.150 kb on + strand, within HEPCGN_09660 at 674.151 kb on - strand, within HEPCGN_09660 at 674.172 kb on - strand, within HEPCGN_09660 at 674.263 kb on + strand, within HEPCGN_09660 at 674.264 kb on - strand, within HEPCGN_09660 at 674.524 kb on + strand at 674.558 kb on - strand at 674.623 kb on - strand at 674.630 kb on + strand at 674.826 kb on - strand, within mcrC at 674.826 kb on - strand, within mcrC at 674.850 kb on + strand, within mcrC at 674.850 kb on + strand, within mcrC at 674.886 kb on + strand, within mcrC at 674.887 kb on - strand, within mcrC at 674.965 kb on + strand, within mcrC at 674.966 kb on - strand, within mcrC at 674.982 kb on + strand, within mcrC at 674.982 kb on + strand, within mcrC at 674.982 kb on + strand, within mcrC at 674.994 kb on + strand, within mcrC at 674.995 kb on - strand, within mcrC at 674.995 kb on - strand, within mcrC at 675.034 kb on - strand, within mcrC at 675.076 kb on + strand, within mcrC at 675.076 kb on + strand, within mcrC at 675.077 kb on - strand, within mcrC at 675.077 kb on - strand, within mcrC at 675.077 kb on - strand, within mcrC at 675.107 kb on + strand, within mcrC at 675.119 kb on + strand, within mcrC at 675.133 kb on - strand, within mcrC at 675.170 kb on - strand, within mcrC at 675.225 kb on + strand, within mcrC at 675.226 kb on - strand, within mcrC at 675.228 kb on - strand, within mcrC at 675.228 kb on - strand, within mcrC at 675.236 kb on + strand, within mcrC at 675.262 kb on + strand, within mcrC at 675.263 kb on - strand, within mcrC at 675.408 kb on - strand, within mcrC at 675.408 kb on - strand, within mcrC at 675.480 kb on + strand, within mcrC at 675.481 kb on - strand, within mcrC at 675.513 kb on + strand, within mcrC
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 672,472 + +0.1 672,472 + +0.9 672,472 + -0.1 672,472 + -0.2 672,472 + +0.6 672,473 - +1.2 672,674 + HEPCGN_09655 0.22 +0.6 672,675 - HEPCGN_09655 0.22 -0.4 672,705 + HEPCGN_09655 0.25 -0.2 672,781 - HEPCGN_09655 0.32 -0.3 672,830 + HEPCGN_09655 0.37 +0.4 672,831 - HEPCGN_09655 0.38 -0.1 672,831 - HEPCGN_09655 0.38 +0.7 672,831 - HEPCGN_09655 0.38 +0.6 672,831 - HEPCGN_09655 0.38 +0.7 672,882 + HEPCGN_09655 0.43 +0.5 673,006 + HEPCGN_09655 0.55 +0.2 673,038 + HEPCGN_09655 0.59 -0.7 673,039 - HEPCGN_09655 0.59 +0.1 673,039 - HEPCGN_09655 0.59 -0.3 673,039 - HEPCGN_09655 0.59 -0.1 673,039 - HEPCGN_09655 0.59 -1.1 673,065 + HEPCGN_09655 0.61 +0.3 673,066 - HEPCGN_09655 0.61 +0.0 673,111 + HEPCGN_09655 0.66 +0.1 673,115 + HEPCGN_09655 0.66 +0.0 673,121 + HEPCGN_09655 0.67 -0.5 673,121 + HEPCGN_09655 0.67 -1.2 673,122 - HEPCGN_09655 0.67 +0.7 673,122 - HEPCGN_09655 0.67 +0.1 673,122 - HEPCGN_09655 0.67 -0.1 673,122 - HEPCGN_09655 0.67 -0.9 673,165 + HEPCGN_09655 0.71 +0.2 673,166 - HEPCGN_09655 0.72 +0.3 673,178 + HEPCGN_09655 0.73 +0.2 673,322 + HEPCGN_09655 0.87 +0.1 673,324 + HEPCGN_09655 0.88 +0.5 673,382 + +1.0 673,383 - -0.1 673,383 - +0.1 673,383 - +0.6 673,383 - -0.6 673,405 + -1.0 673,405 + -0.2 673,408 + -0.2 673,430 - +2.1 673,437 - -0.5 673,461 + +0.2 673,464 - +0.2 673,492 - +0.1 673,494 - -0.5 673,517 - +1.7 673,593 + HEPCGN_09660 0.13 -0.0 673,652 + HEPCGN_09660 0.18 +0.0 673,675 - HEPCGN_09660 0.21 -0.9 673,731 + HEPCGN_09660 0.26 -0.0 673,754 + HEPCGN_09660 0.28 +0.2 673,855 + HEPCGN_09660 0.37 -0.8 673,873 + HEPCGN_09660 0.39 -0.3 673,923 - HEPCGN_09660 0.43 +1.1 673,959 - HEPCGN_09660 0.47 +1.4 673,976 + HEPCGN_09660 0.48 +0.4 673,993 + HEPCGN_09660 0.50 -0.2 673,994 - HEPCGN_09660 0.50 +1.1 674,060 - HEPCGN_09660 0.56 +0.0 674,104 + HEPCGN_09660 0.60 +0.3 674,105 - HEPCGN_09660 0.60 +0.3 674,150 + HEPCGN_09660 0.64 -0.3 674,150 + HEPCGN_09660 0.64 -0.6 674,151 - HEPCGN_09660 0.64 +0.5 674,172 - HEPCGN_09660 0.66 +1.0 674,263 + HEPCGN_09660 0.75 +1.7 674,264 - HEPCGN_09660 0.75 +1.4 674,524 + -0.2 674,558 - +0.1 674,623 - -0.8 674,630 + +0.5 674,826 - mcrC HEPCGN_09665 0.22 -0.2 674,826 - mcrC HEPCGN_09665 0.22 -0.8 674,850 + mcrC HEPCGN_09665 0.24 -0.8 674,850 + mcrC HEPCGN_09665 0.24 +0.1 674,886 + mcrC HEPCGN_09665 0.26 +1.2 674,887 - mcrC HEPCGN_09665 0.27 -0.5 674,965 + mcrC HEPCGN_09665 0.32 +0.2 674,966 - mcrC HEPCGN_09665 0.32 +1.0 674,982 + mcrC HEPCGN_09665 0.34 +0.4 674,982 + mcrC HEPCGN_09665 0.34 +0.5 674,982 + mcrC HEPCGN_09665 0.34 +0.5 674,994 + mcrC HEPCGN_09665 0.35 +0.1 674,995 - mcrC HEPCGN_09665 0.35 -0.5 674,995 - mcrC HEPCGN_09665 0.35 -0.9 675,034 - mcrC HEPCGN_09665 0.38 -0.8 675,076 + mcrC HEPCGN_09665 0.41 +0.2 675,076 + mcrC HEPCGN_09665 0.41 +0.2 675,077 - mcrC HEPCGN_09665 0.41 -1.3 675,077 - mcrC HEPCGN_09665 0.41 +0.6 675,077 - mcrC HEPCGN_09665 0.41 -0.3 675,107 + mcrC HEPCGN_09665 0.43 -0.1 675,119 + mcrC HEPCGN_09665 0.44 +0.1 675,133 - mcrC HEPCGN_09665 0.45 -0.5 675,170 - mcrC HEPCGN_09665 0.48 +0.5 675,225 + mcrC HEPCGN_09665 0.52 -0.4 675,226 - mcrC HEPCGN_09665 0.52 +1.3 675,228 - mcrC HEPCGN_09665 0.52 +0.2 675,228 - mcrC HEPCGN_09665 0.52 -0.5 675,236 + mcrC HEPCGN_09665 0.53 -0.3 675,262 + mcrC HEPCGN_09665 0.54 -1.7 675,263 - mcrC HEPCGN_09665 0.55 +0.3 675,408 - mcrC HEPCGN_09665 0.65 +0.2 675,408 - mcrC HEPCGN_09665 0.65 -1.2 675,480 + mcrC HEPCGN_09665 0.71 -0.4 675,481 - mcrC HEPCGN_09665 0.71 +0.8 675,513 + mcrC HEPCGN_09665 0.73 +0.7
Or see this region's nucleotide sequence