Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt copD and copD are separated by 12 nucleotides copD and pphA are separated by 393 nucleotides pphA and yebW are separated by 0 nucleotides yebW and yebV are separated by 20 nucleotides yebV and rsmF are separated by 117 nucleotides
HEPCGN_04805: copD - copper homeostasis membrane protein CopD, at 838,214 to 839,086
copD
HEPCGN_04810: copD - copper homeostasis membrane protein CopD, at 839,099 to 839,440
copD
HEPCGN_04825: pphA - protein-serine/threonine phosphatase, at 839,834 to 840,490
pphA
HEPCGN_04830: yebW - Uncharacterized protein YebW, at 840,491 to 840,766
yebW
HEPCGN_04835: yebV - Uncharacterized protein YebV, at 840,787 to 841,023
yebV
HEPCGN_04840: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 841,141 to 842,586
rsmF
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1 at 838.921 kb on + strand, within copD at 838.921 kb on + strand, within copD at 838.921 kb on + strand, within copD at 838.949 kb on + strand, within copD at 839.032 kb on - strand at 839.093 kb on - strand at 839.252 kb on - strand, within copD at 839.261 kb on + strand, within copD at 839.261 kb on + strand, within copD at 839.261 kb on + strand, within copD at 839.270 kb on - strand, within copD at 839.278 kb on + strand, within copD at 839.338 kb on + strand, within copD at 839.338 kb on + strand, within copD at 839.446 kb on - strand at 839.451 kb on - strand at 839.516 kb on + strand at 839.517 kb on - strand at 839.585 kb on + strand at 839.707 kb on - strand at 839.737 kb on + strand at 839.738 kb on - strand at 839.749 kb on + strand at 839.761 kb on + strand at 839.762 kb on - strand at 839.829 kb on + strand at 839.907 kb on + strand, within pphA at 839.907 kb on + strand, within pphA at 839.908 kb on - strand, within pphA at 839.908 kb on - strand, within pphA at 839.908 kb on - strand, within pphA at 839.908 kb on - strand, within pphA at 839.973 kb on + strand, within pphA at 839.973 kb on + strand, within pphA at 839.978 kb on - strand, within pphA at 839.978 kb on - strand, within pphA at 840.061 kb on - strand, within pphA at 840.145 kb on + strand, within pphA at 840.161 kb on + strand, within pphA at 840.162 kb on - strand, within pphA at 840.162 kb on - strand, within pphA at 840.203 kb on + strand, within pphA at 840.203 kb on + strand, within pphA at 840.226 kb on - strand, within pphA at 840.281 kb on + strand, within pphA at 840.281 kb on + strand, within pphA at 840.282 kb on - strand, within pphA at 840.336 kb on + strand, within pphA at 840.365 kb on - strand, within pphA at 840.394 kb on + strand, within pphA at 840.395 kb on - strand, within pphA at 840.395 kb on - strand, within pphA at 840.434 kb on + strand at 840.437 kb on - strand at 840.437 kb on - strand at 840.488 kb on + strand at 840.533 kb on + strand, within yebW at 840.534 kb on - strand, within yebW at 840.586 kb on + strand, within yebW at 840.587 kb on - strand, within yebW at 840.591 kb on + strand, within yebW at 840.655 kb on - strand, within yebW at 840.877 kb on - strand, within yebV at 840.877 kb on - strand, within yebV at 840.909 kb on + strand, within yebV at 840.913 kb on + strand, within yebV at 841.088 kb on + strand at 841.259 kb on - strand at 841.271 kb on - strand at 841.407 kb on + strand, within rsmF
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 838,921 + copD HEPCGN_04805 0.81 -0.9 838,921 + copD HEPCGN_04805 0.81 -0.2 838,921 + copD HEPCGN_04805 0.81 -0.6 838,949 + copD HEPCGN_04805 0.84 -0.5 839,032 - -0.6 839,093 - -2.4 839,252 - copD HEPCGN_04810 0.45 +0.9 839,261 + copD HEPCGN_04810 0.47 -0.8 839,261 + copD HEPCGN_04810 0.47 +0.2 839,261 + copD HEPCGN_04810 0.47 +0.6 839,270 - copD HEPCGN_04810 0.50 -1.4 839,278 + copD HEPCGN_04810 0.52 +0.9 839,338 + copD HEPCGN_04810 0.70 -0.6 839,338 + copD HEPCGN_04810 0.70 +0.5 839,446 - +0.1 839,451 - -0.7 839,516 + +1.4 839,517 - +0.2 839,585 + -0.5 839,707 - -0.8 839,737 + -0.2 839,738 - -0.2 839,749 + +0.6 839,761 + -1.6 839,762 - +0.4 839,829 + +0.7 839,907 + pphA HEPCGN_04825 0.11 -0.5 839,907 + pphA HEPCGN_04825 0.11 +0.1 839,908 - pphA HEPCGN_04825 0.11 -1.8 839,908 - pphA HEPCGN_04825 0.11 +0.1 839,908 - pphA HEPCGN_04825 0.11 -0.6 839,908 - pphA HEPCGN_04825 0.11 -0.2 839,973 + pphA HEPCGN_04825 0.21 +0.5 839,973 + pphA HEPCGN_04825 0.21 -0.1 839,978 - pphA HEPCGN_04825 0.22 +1.0 839,978 - pphA HEPCGN_04825 0.22 -0.0 840,061 - pphA HEPCGN_04825 0.35 -1.0 840,145 + pphA HEPCGN_04825 0.47 +0.4 840,161 + pphA HEPCGN_04825 0.50 -0.8 840,162 - pphA HEPCGN_04825 0.50 -0.9 840,162 - pphA HEPCGN_04825 0.50 +0.2 840,203 + pphA HEPCGN_04825 0.56 -0.1 840,203 + pphA HEPCGN_04825 0.56 -0.0 840,226 - pphA HEPCGN_04825 0.60 -0.1 840,281 + pphA HEPCGN_04825 0.68 +0.4 840,281 + pphA HEPCGN_04825 0.68 -0.6 840,282 - pphA HEPCGN_04825 0.68 -0.1 840,336 + pphA HEPCGN_04825 0.76 +0.7 840,365 - pphA HEPCGN_04825 0.81 -0.6 840,394 + pphA HEPCGN_04825 0.85 -0.8 840,395 - pphA HEPCGN_04825 0.85 +0.3 840,395 - pphA HEPCGN_04825 0.85 -0.9 840,434 + +0.4 840,437 - -1.7 840,437 - -0.6 840,488 + -1.3 840,533 + yebW HEPCGN_04830 0.15 +1.2 840,534 - yebW HEPCGN_04830 0.16 +0.2 840,586 + yebW HEPCGN_04830 0.34 +0.4 840,587 - yebW HEPCGN_04830 0.35 +0.5 840,591 + yebW HEPCGN_04830 0.36 +0.9 840,655 - yebW HEPCGN_04830 0.59 +0.2 840,877 - yebV HEPCGN_04835 0.38 -0.5 840,877 - yebV HEPCGN_04835 0.38 -0.5 840,909 + yebV HEPCGN_04835 0.51 +1.4 840,913 + yebV HEPCGN_04835 0.53 -0.1 841,088 + +0.5 841,259 - -0.1 841,271 - -0.1 841,407 + rsmF HEPCGN_04840 0.18 -0.9
Or see this region's nucleotide sequence