Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00540

Experiment: JK36

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK36
28,814	-	ybcY	HEPCGN_00530	0.34	-0.0
28,835	-	ybcY	HEPCGN_00530	0.37	+0.5
28,838	-	ybcY	HEPCGN_00530	0.38	-0.5
28,838	-	ybcY	HEPCGN_00530	0.38	-0.6
28,838	-	ybcY	HEPCGN_00530	0.38	+0.0
28,916	-	ybcY	HEPCGN_00530	0.49	-0.4
28,956	+	ybcY	HEPCGN_00530	0.56	-0.9
28,986	+	ybcY	HEPCGN_00530	0.60	+0.2
28,986	+	ybcY	HEPCGN_00530	0.60	-0.9
29,048	-	ybcY	HEPCGN_00530	0.70	+0.4
29,097	+	ybcY	HEPCGN_00530	0.77	-0.2
29,304	-				+1.0
29,427	+		HEPCGN_00535	0.55	-0.3
29,427	+		HEPCGN_00535	0.55	+1.1
29,427	+		HEPCGN_00535	0.55	-0.5
29,428	-		HEPCGN_00535	0.56	-0.4
29,429	+		HEPCGN_00535	0.56	-0.1
29,430	-		HEPCGN_00535	0.57	+1.7
29,528	-				-0.1
29,528	-				+1.1
29,535	+				-0.3
29,536	-				-2.7
29,607	+				+0.1
29,701	-				-0.4
29,917	+				-0.3
30,015	-	menH	HEPCGN_00540	0.15	+0.2
30,073	+	menH	HEPCGN_00540	0.19	-1.0
30,074	-	menH	HEPCGN_00540	0.19	-1.2
30,074	-	menH	HEPCGN_00540	0.19	-0.4
30,077	+	menH	HEPCGN_00540	0.19	-1.9
30,078	-	menH	HEPCGN_00540	0.19	+0.1
30,078	-	menH	HEPCGN_00540	0.19	+0.0
30,210	-	menH	HEPCGN_00540	0.28	-0.8
30,286	+	menH	HEPCGN_00540	0.33	+0.3
30,286	+	menH	HEPCGN_00540	0.33	-0.8
30,395	-	menH	HEPCGN_00540	0.40	+0.8
30,413	+	menH	HEPCGN_00540	0.41	-0.1
30,443	+	menH	HEPCGN_00540	0.43	-0.1
30,444	-	menH	HEPCGN_00540	0.44	-1.2
30,462	-	menH	HEPCGN_00540	0.45	+0.3
30,544	-	menH	HEPCGN_00540	0.50	-0.5
30,627	-	menH	HEPCGN_00540	0.56	-0.8
30,653	+	menH	HEPCGN_00540	0.58	+0.4
30,653	+	menH	HEPCGN_00540	0.58	-0.5
30,654	-	menH	HEPCGN_00540	0.58	-0.9
30,752	-	menH	HEPCGN_00540	0.64	-0.4
30,853	+	menH	HEPCGN_00540	0.71	-0.1
30,854	-	menH	HEPCGN_00540	0.71	-0.6
30,916	+	menH	HEPCGN_00540	0.75	-0.4
30,962	-	menH	HEPCGN_00540	0.78	-0.6
30,964	+	menH	HEPCGN_00540	0.79	-0.6
30,964	+	menH	HEPCGN_00540	0.79	-0.3
30,966	+	menH	HEPCGN_00540	0.79	-1.2
31,013	-	menH	HEPCGN_00540	0.82	-0.6
31,056	-	menH	HEPCGN_00540	0.85	+0.0
31,081	-	menH	HEPCGN_00540	0.86	-1.5
31,242	-				+0.3
31,303	+				-0.0
31,323	-				+0.1
31,365	+				+1.3
31,406	+				+0.4
31,406	+				-0.9
31,407	-				+0.1
31,439	-				-1.0
31,483	+				-0.3
31,484	-				-1.4
31,540	-				-0.1
31,645	-	ompT	HEPCGN_00545	0.18	-0.7
31,702	-	ompT	HEPCGN_00545	0.24	+0.6
31,768	+	ompT	HEPCGN_00545	0.31	+0.4
31,769	-	ompT	HEPCGN_00545	0.31	+0.5
31,769	-	ompT	HEPCGN_00545	0.31	+0.1
31,920	+	ompT	HEPCGN_00545	0.47	+0.1
31,921	-	ompT	HEPCGN_00545	0.47	+0.5
32,053	+	ompT	HEPCGN_00545	0.61	+0.1
32,066	-	ompT	HEPCGN_00545	0.63	-0.5
32,122	+	ompT	HEPCGN_00545	0.68	-1.2
32,123	-	ompT	HEPCGN_00545	0.69	+0.7
32,167	+	ompT	HEPCGN_00545	0.73	+0.4
32,167	+	ompT	HEPCGN_00545	0.73	+1.7
32,172	-	ompT	HEPCGN_00545	0.74	-0.5
32,209	+	ompT	HEPCGN_00545	0.78	-0.4