Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiaG and HEPCGN_01965 overlap by 11 nucleotides HEPCGN_01965 and rimO are separated by 225 nucleotides rimO and bssR are separated by 212 nucleotides bssR and yliI are separated by 110 nucleotides
HEPCGN_01960: yiaG - transcriptional regulator, at 320,367 to 320,696
yiaG
HEPCGN_01965: HEPCGN_01965 - addiction module toxin RelE, at 320,686 to 321,072
_01965
HEPCGN_01970: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 321,298 to 322,623
rimO
HEPCGN_01975: bssR - biofilm formation regulator BssR, at 322,836 to 323,219
bssR
HEPCGN_01980: yliI - aldose sugar dehydrogenase YliI, at 323,330 to 324,445
yliI
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 320.406 kb on - strand, within yiaG at 320.414 kb on + strand, within yiaG at 320.448 kb on - strand, within yiaG at 320.489 kb on + strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.746 kb on - strand, within HEPCGN_01965 at 321.022 kb on - strand, within HEPCGN_01965 at 321.062 kb on + strand at 321.062 kb on + strand at 321.063 kb on - strand at 321.072 kb on + strand at 321.073 kb on - strand at 321.073 kb on - strand at 321.229 kb on - strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.278 kb on + strand at 321.299 kb on + strand at 321.324 kb on - strand at 321.466 kb on - strand, within rimO at 321.618 kb on - strand, within rimO at 321.668 kb on - strand, within rimO at 321.668 kb on - strand, within rimO at 321.781 kb on + strand, within rimO at 321.915 kb on - strand, within rimO at 322.015 kb on - strand, within rimO at 322.038 kb on + strand, within rimO at 322.066 kb on - strand, within rimO at 322.079 kb on - strand, within rimO at 322.079 kb on - strand, within rimO at 322.099 kb on + strand, within rimO at 322.197 kb on - strand, within rimO at 322.202 kb on + strand, within rimO at 322.202 kb on + strand, within rimO at 322.203 kb on - strand, within rimO at 322.308 kb on - strand, within rimO at 322.311 kb on + strand, within rimO at 322.312 kb on - strand, within rimO at 322.393 kb on + strand, within rimO at 322.393 kb on + strand, within rimO at 322.499 kb on + strand at 322.499 kb on + strand at 322.499 kb on + strand at 322.500 kb on - strand at 322.500 kb on - strand at 322.545 kb on + strand at 322.545 kb on + strand at 322.546 kb on - strand at 322.794 kb on - strand at 322.800 kb on + strand at 322.801 kb on - strand at 322.801 kb on - strand at 322.835 kb on + strand at 322.836 kb on - strand at 322.905 kb on + strand, within bssR at 322.906 kb on - strand, within bssR at 322.906 kb on - strand, within bssR at 322.933 kb on - strand, within bssR at 322.933 kb on - strand, within bssR at 323.001 kb on - strand, within bssR at 323.086 kb on + strand, within bssR at 323.086 kb on + strand, within bssR at 323.086 kb on + strand, within bssR at 323.087 kb on - strand, within bssR at 323.123 kb on + strand, within bssR at 323.124 kb on - strand, within bssR at 323.127 kb on - strand, within bssR at 323.362 kb on + strand at 323.479 kb on - strand, within yliI at 323.479 kb on - strand, within yliI
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 320,406 - yiaG HEPCGN_01960 0.12 +0.7 320,414 + yiaG HEPCGN_01960 0.14 -2.4 320,448 - yiaG HEPCGN_01960 0.25 +3.1 320,489 + yiaG HEPCGN_01960 0.37 -1.1 320,490 - yiaG HEPCGN_01960 0.37 +0.4 320,490 - yiaG HEPCGN_01960 0.37 +0.4 320,490 - yiaG HEPCGN_01960 0.37 -1.5 320,490 - yiaG HEPCGN_01960 0.37 +0.4 320,746 - HEPCGN_01965 0.16 -0.5 321,022 - HEPCGN_01965 0.87 -0.6 321,062 + -0.4 321,062 + -0.5 321,063 - +0.5 321,072 + +1.1 321,073 - -1.4 321,073 - -0.2 321,229 - +1.6 321,269 + -2.5 321,269 + +0.1 321,278 + +0.2 321,299 + +0.4 321,324 - +0.3 321,466 - rimO HEPCGN_01970 0.13 +0.6 321,618 - rimO HEPCGN_01970 0.24 -0.0 321,668 - rimO HEPCGN_01970 0.28 -1.3 321,668 - rimO HEPCGN_01970 0.28 -1.7 321,781 + rimO HEPCGN_01970 0.36 -0.1 321,915 - rimO HEPCGN_01970 0.47 -0.7 322,015 - rimO HEPCGN_01970 0.54 +0.1 322,038 + rimO HEPCGN_01970 0.56 -2.2 322,066 - rimO HEPCGN_01970 0.58 +0.0 322,079 - rimO HEPCGN_01970 0.59 -0.4 322,079 - rimO HEPCGN_01970 0.59 +0.2 322,099 + rimO HEPCGN_01970 0.60 +0.7 322,197 - rimO HEPCGN_01970 0.68 -0.6 322,202 + rimO HEPCGN_01970 0.68 -0.2 322,202 + rimO HEPCGN_01970 0.68 -0.7 322,203 - rimO HEPCGN_01970 0.68 -0.1 322,308 - rimO HEPCGN_01970 0.76 +0.2 322,311 + rimO HEPCGN_01970 0.76 +0.9 322,312 - rimO HEPCGN_01970 0.76 -0.2 322,393 + rimO HEPCGN_01970 0.83 +0.9 322,393 + rimO HEPCGN_01970 0.83 +0.6 322,499 + -0.3 322,499 + +1.2 322,499 + +0.6 322,500 - -1.0 322,500 - -0.5 322,545 + +0.3 322,545 + -1.0 322,546 - +0.3 322,794 - +1.5 322,800 + -1.2 322,801 - -0.4 322,801 - -1.7 322,835 + -0.8 322,836 - +0.2 322,905 + bssR HEPCGN_01975 0.18 +1.0 322,906 - bssR HEPCGN_01975 0.18 -1.2 322,906 - bssR HEPCGN_01975 0.18 +0.3 322,933 - bssR HEPCGN_01975 0.25 +1.1 322,933 - bssR HEPCGN_01975 0.25 +0.5 323,001 - bssR HEPCGN_01975 0.43 -0.6 323,086 + bssR HEPCGN_01975 0.65 -0.6 323,086 + bssR HEPCGN_01975 0.65 +0.6 323,086 + bssR HEPCGN_01975 0.65 -0.4 323,087 - bssR HEPCGN_01975 0.65 +0.1 323,123 + bssR HEPCGN_01975 0.75 -0.4 323,124 - bssR HEPCGN_01975 0.75 -0.6 323,127 - bssR HEPCGN_01975 0.76 +0.9 323,362 + +0.1 323,479 - yliI HEPCGN_01980 0.13 -0.7 323,479 - yliI HEPCGN_01980 0.13 +1.0
Or see this region's nucleotide sequence