Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27400

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_27390 and HEPCGN_27395 are separated by 239 nucleotidesHEPCGN_27395 and HEPCGN_27400 are separated by 37 nucleotidesHEPCGN_27400 and HEPCGN_27405 are separated by 45 nucleotides HEPCGN_27390: HEPCGN_27390 - transcriptional regulator, at 47,299 to 47,559 _27390 HEPCGN_27395: HEPCGN_27395 - DUF2726 domain-containing protein, at 47,799 to 48,389 _27395 HEPCGN_27400: HEPCGN_27400 - transcriptional regulator, at 48,427 to 48,636 _27400 HEPCGN_27405: HEPCGN_27405 - Uncharacterized endonuclease, at 48,682 to 49,143 _27405 Position (kb) 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 47.442 kb on + strand, within HEPCGN_27390at 47.443 kb on - strand, within HEPCGN_27390at 47.443 kb on - strand, within HEPCGN_27390at 47.470 kb on + strand, within HEPCGN_27390at 47.471 kb on - strand, within HEPCGN_27390at 47.471 kb on - strand, within HEPCGN_27390at 47.471 kb on - strand, within HEPCGN_27390at 47.471 kb on - strand, within HEPCGN_27390at 47.471 kb on - strand, within HEPCGN_27390at 47.471 kb on - strand, within HEPCGN_27390at 47.503 kb on - strand, within HEPCGN_27390at 47.503 kb on - strand, within HEPCGN_27390at 47.503 kb on - strand, within HEPCGN_27390at 47.513 kb on + strand, within HEPCGN_27390at 47.603 kb on - strandat 47.676 kb on + strandat 47.676 kb on + strandat 47.677 kb on - strandat 47.686 kb on + strandat 47.696 kb on + strandat 47.696 kb on + strandat 47.697 kb on - strandat 47.697 kb on - strandat 47.708 kb on + strandat 47.708 kb on + strandat 47.708 kb on + strandat 47.708 kb on + strandat 47.709 kb on - strandat 47.709 kb on - strandat 47.709 kb on - strandat 47.711 kb on + strandat 47.712 kb on - strandat 47.804 kb on + strandat 47.804 kb on + strandat 47.805 kb on - strandat 47.805 kb on - strandat 47.805 kb on - strandat 47.840 kb on + strandat 47.841 kb on - strandat 47.841 kb on - strandat 47.961 kb on + strand, within HEPCGN_27395at 47.962 kb on - strand, within HEPCGN_27395at 47.986 kb on - strand, within HEPCGN_27395at 48.000 kb on - strand, within HEPCGN_27395at 48.060 kb on + strand, within HEPCGN_27395at 48.142 kb on + strand, within HEPCGN_27395at 48.143 kb on - strand, within HEPCGN_27395at 48.143 kb on - strand, within HEPCGN_27395at 48.156 kb on - strand, within HEPCGN_27395at 48.156 kb on - strand, within HEPCGN_27395at 48.182 kb on + strand, within HEPCGN_27395at 48.182 kb on + strand, within HEPCGN_27395at 48.183 kb on - strand, within HEPCGN_27395at 48.247 kb on - strand, within HEPCGN_27395at 48.270 kb on + strand, within HEPCGN_27395at 48.270 kb on + strand, within HEPCGN_27395at 48.270 kb on + strand, within HEPCGN_27395at 48.271 kb on - strand, within HEPCGN_27395at 48.271 kb on - strand, within HEPCGN_27395at 48.315 kb on + strand, within HEPCGN_27395at 48.339 kb on - strandat 48.342 kb on + strandat 48.412 kb on - strandat 48.559 kb on - strand, within HEPCGN_27400at 48.687 kb on + strandat 48.803 kb on + strand, within HEPCGN_27405at 48.803 kb on + strand, within HEPCGN_27405at 48.803 kb on + strand, within HEPCGN_27405at 48.804 kb on - strand, within HEPCGN_27405at 48.831 kb on + strand, within HEPCGN_27405at 48.887 kb on + strand, within HEPCGN_27405at 48.888 kb on - strand, within HEPCGN_27405at 48.906 kb on - strand, within HEPCGN_27405at 49.163 kb on - strandat 49.261 kb on - strandat 49.344 kb on - strandat 49.369 kb on - strandat 49.615 kb on + strandat 49.616 kb on - strandat 49.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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47,442 + HEPCGN_27390 0.55 +0.0
47,443 - HEPCGN_27390 0.55 -1.0
47,443 - HEPCGN_27390 0.55 -1.1
47,470 + HEPCGN_27390 0.66 -1.9
47,471 - HEPCGN_27390 0.66 -0.3
47,471 - HEPCGN_27390 0.66 -1.1
47,471 - HEPCGN_27390 0.66 -1.5
47,471 - HEPCGN_27390 0.66 -0.5
47,471 - HEPCGN_27390 0.66 -0.5
47,471 - HEPCGN_27390 0.66 -0.6
47,503 - HEPCGN_27390 0.78 -0.4
47,503 - HEPCGN_27390 0.78 -2.5
47,503 - HEPCGN_27390 0.78 -3.3
47,513 + HEPCGN_27390 0.82 -0.3
47,603 - -0.7
47,676 + +0.2
47,676 + -0.1
47,677 - -0.4
47,686 + +0.8
47,696 + -0.3
47,696 + -2.3
47,697 - -0.3
47,697 - +1.3
47,708 + -0.1
47,708 + -0.3
47,708 + +1.2
47,708 + +0.1
47,709 - -1.7
47,709 - -0.6
47,709 - +0.7
47,711 + +0.7
47,712 - -2.3
47,804 + +1.0
47,804 + -0.1
47,805 - +0.1
47,805 - +0.5
47,805 - +0.4
47,840 + -0.6
47,841 - -0.3
47,841 - -0.8
47,961 + HEPCGN_27395 0.27 +0.0
47,962 - HEPCGN_27395 0.28 -0.6
47,986 - HEPCGN_27395 0.32 -0.8
48,000 - HEPCGN_27395 0.34 -1.3
48,060 + HEPCGN_27395 0.44 +1.0
48,142 + HEPCGN_27395 0.58 -0.6
48,143 - HEPCGN_27395 0.58 +1.1
48,143 - HEPCGN_27395 0.58 +0.7
48,156 - HEPCGN_27395 0.60 +1.0
48,156 - HEPCGN_27395 0.60 +0.6
48,182 + HEPCGN_27395 0.65 +0.3
48,182 + HEPCGN_27395 0.65 -0.5
48,183 - HEPCGN_27395 0.65 -0.1
48,247 - HEPCGN_27395 0.76 -1.0
48,270 + HEPCGN_27395 0.80 -0.6
48,270 + HEPCGN_27395 0.80 +0.5
48,270 + HEPCGN_27395 0.80 -0.4
48,271 - HEPCGN_27395 0.80 +1.5
48,271 - HEPCGN_27395 0.80 +0.0
48,315 + HEPCGN_27395 0.87 -0.3
48,339 - -0.1
48,342 + -0.2
48,412 - -0.5
48,559 - HEPCGN_27400 0.63 -0.9
48,687 + -1.8
48,803 + HEPCGN_27405 0.26 +1.5
48,803 + HEPCGN_27405 0.26 +0.0
48,803 + HEPCGN_27405 0.26 +0.3
48,804 - HEPCGN_27405 0.26 +0.4
48,831 + HEPCGN_27405 0.32 -0.6
48,887 + HEPCGN_27405 0.44 -0.4
48,888 - HEPCGN_27405 0.45 -2.1
48,906 - HEPCGN_27405 0.48 -0.2
49,163 - +0.6
49,261 - +0.4
49,344 - +0.7
49,369 - +0.4
49,615 + +0.4
49,616 - -0.9
49,616 - +0.2

Or see this region's nucleotide sequence