Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdnH and fdnI overlap by 8 nucleotides fdnI and yddM are separated by 50 nucleotides yddM and HEPCGN_26420 overlap by 1 nucleotides HEPCGN_26420 and HEPCGN_26425 are separated by 95 nucleotides HEPCGN_26425 and adhP overlap by 81 nucleotides
HEPCGN_26405: fdnH - formate dehydrogenase N subunit beta, at 4,032,778 to 4,033,662
fdnH
HEPCGN_26410: fdnI - formate dehydrogenase-N subunit gamma, at 4,033,655 to 4,034,308
fdnI
HEPCGN_26415: yddM - HigA family addiction module antitoxin, at 4,034,359 to 4,034,643
yddM
HEPCGN_26420: HEPCGN_26420 - Killer protein, at 4,034,643 to 4,034,921
_26420
HEPCGN_26425: HEPCGN_26425 - hypothetical protein, at 4,035,017 to 4,035,187
_26425
HEPCGN_26430: adhP - alcohol dehydrogenase AdhP, at 4,035,107 to 4,036,117
adhP
Position (kb) 4034
4035 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4034.162 kb on - strand, within fdnI at 4034.162 kb on - strand, within fdnI at 4034.162 kb on - strand, within fdnI at 4034.162 kb on - strand, within fdnI at 4034.162 kb on - strand, within fdnI at 4034.165 kb on + strand, within fdnI at 4034.165 kb on + strand, within fdnI at 4034.165 kb on + strand, within fdnI at 4034.165 kb on + strand, within fdnI at 4034.166 kb on - strand, within fdnI at 4034.304 kb on + strand at 4034.307 kb on - strand at 4034.307 kb on - strand at 4034.307 kb on - strand at 4034.307 kb on - strand at 4034.323 kb on + strand at 4034.667 kb on + strand at 4034.667 kb on + strand at 4034.671 kb on + strand, within HEPCGN_26420 at 4034.672 kb on - strand, within HEPCGN_26420 at 4034.672 kb on - strand, within HEPCGN_26420 at 4034.672 kb on - strand, within HEPCGN_26420 at 4034.724 kb on + strand, within HEPCGN_26420 at 4034.725 kb on - strand, within HEPCGN_26420 at 4035.085 kb on + strand, within HEPCGN_26425 at 4035.085 kb on + strand, within HEPCGN_26425 at 4035.086 kb on - strand, within HEPCGN_26425 at 4035.086 kb on - strand, within HEPCGN_26425 at 4035.086 kb on - strand, within HEPCGN_26425 at 4035.131 kb on - strand at 4035.326 kb on - strand, within adhP at 4035.326 kb on - strand, within adhP at 4035.403 kb on + strand, within adhP at 4035.615 kb on + strand, within adhP at 4035.615 kb on + strand, within adhP at 4035.616 kb on - strand, within adhP at 4035.619 kb on + strand, within adhP at 4035.619 kb on + strand, within adhP at 4035.666 kb on + strand, within adhP at 4035.832 kb on + strand, within adhP at 4035.832 kb on + strand, within adhP at 4035.832 kb on + strand, within adhP at 4035.832 kb on + strand, within adhP at 4035.833 kb on - strand, within adhP at 4035.833 kb on - strand, within adhP at 4035.862 kb on - strand, within adhP at 4035.896 kb on + strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,034,162 - fdnI HEPCGN_26410 0.78 -0.5 4,034,162 - fdnI HEPCGN_26410 0.78 +1.2 4,034,162 - fdnI HEPCGN_26410 0.78 +0.1 4,034,162 - fdnI HEPCGN_26410 0.78 -2.0 4,034,162 - fdnI HEPCGN_26410 0.78 +0.2 4,034,165 + fdnI HEPCGN_26410 0.78 -0.2 4,034,165 + fdnI HEPCGN_26410 0.78 -0.5 4,034,165 + fdnI HEPCGN_26410 0.78 +0.1 4,034,165 + fdnI HEPCGN_26410 0.78 -0.4 4,034,166 - fdnI HEPCGN_26410 0.78 +0.6 4,034,304 + -0.8 4,034,307 - +0.2 4,034,307 - +1.0 4,034,307 - +1.1 4,034,307 - -0.4 4,034,323 + -1.0 4,034,667 + -0.4 4,034,667 + +0.0 4,034,671 + HEPCGN_26420 0.10 +0.3 4,034,672 - HEPCGN_26420 0.10 +0.3 4,034,672 - HEPCGN_26420 0.10 -1.5 4,034,672 - HEPCGN_26420 0.10 -0.5 4,034,724 + HEPCGN_26420 0.29 +2.5 4,034,725 - HEPCGN_26420 0.29 -0.3 4,035,085 + HEPCGN_26425 0.40 +0.5 4,035,085 + HEPCGN_26425 0.40 -0.6 4,035,086 - HEPCGN_26425 0.40 +0.7 4,035,086 - HEPCGN_26425 0.40 -0.2 4,035,086 - HEPCGN_26425 0.40 +0.7 4,035,131 - +0.8 4,035,326 - adhP HEPCGN_26430 0.22 +0.2 4,035,326 - adhP HEPCGN_26430 0.22 +0.4 4,035,403 + adhP HEPCGN_26430 0.29 -1.9 4,035,615 + adhP HEPCGN_26430 0.50 -1.4 4,035,615 + adhP HEPCGN_26430 0.50 +1.1 4,035,616 - adhP HEPCGN_26430 0.50 +0.3 4,035,619 + adhP HEPCGN_26430 0.51 -0.8 4,035,619 + adhP HEPCGN_26430 0.51 +0.6 4,035,666 + adhP HEPCGN_26430 0.55 -0.3 4,035,832 + adhP HEPCGN_26430 0.72 +0.5 4,035,832 + adhP HEPCGN_26430 0.72 -0.9 4,035,832 + adhP HEPCGN_26430 0.72 -2.2 4,035,832 + adhP HEPCGN_26430 0.72 +0.3 4,035,833 - adhP HEPCGN_26430 0.72 +0.6 4,035,833 - adhP HEPCGN_26430 0.72 -2.4 4,035,862 - adhP HEPCGN_26430 0.75 -0.2 4,035,896 + adhP HEPCGN_26430 0.78 -1.5
Or see this region's nucleotide sequence