Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26380

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarU and espR1 are separated by 309 nucleotidesespR1 and HEPCGN_26385 are separated by 62 nucleotides HEPCGN_26375: narU - nitrate/nitrite transporter NarU, at 4,022,801 to 4,024,189 narU HEPCGN_26380: espR1 - Type III secretion system effector espR1, at 4,024,499 to 4,025,755 espR1 HEPCGN_26385: HEPCGN_26385 - leucine Rich Repeat family protein, at 4,025,818 to 4,027,077 _26385 Position (kb) 4024 4025 4026Strain fitness (log2 ratio) -2 -1 0 1at 4023.531 kb on - strand, within narUat 4023.617 kb on + strand, within narUat 4023.663 kb on - strand, within narUat 4023.689 kb on - strand, within narUat 4023.780 kb on - strand, within narUat 4023.814 kb on + strand, within narUat 4023.902 kb on + strand, within narUat 4023.902 kb on + strand, within narUat 4024.022 kb on - strand, within narUat 4024.353 kb on + strandat 4024.401 kb on - strandat 4024.589 kb on - strandat 4025.287 kb on + strand, within espR1at 4025.901 kb on + strandat 4025.935 kb on + strandat 4026.012 kb on + strand, within HEPCGN_26385at 4026.380 kb on + strand, within HEPCGN_26385at 4026.472 kb on - strand, within HEPCGN_26385

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,023,531 - narU HEPCGN_26375 0.53 -0.3
4,023,617 + narU HEPCGN_26375 0.59 +0.0
4,023,663 - narU HEPCGN_26375 0.62 -0.4
4,023,689 - narU HEPCGN_26375 0.64 +0.7
4,023,780 - narU HEPCGN_26375 0.70 +0.6
4,023,814 + narU HEPCGN_26375 0.73 +1.1
4,023,902 + narU HEPCGN_26375 0.79 -1.1
4,023,902 + narU HEPCGN_26375 0.79 +1.3
4,024,022 - narU HEPCGN_26375 0.88 +0.9
4,024,353 + +1.0
4,024,401 - -1.9
4,024,589 - -1.8
4,025,287 + espR1 HEPCGN_26380 0.63 -0.9
4,025,901 + +0.0
4,025,935 + -1.2
4,026,012 + HEPCGN_26385 0.15 -0.8
4,026,380 + HEPCGN_26385 0.45 +0.7
4,026,472 - HEPCGN_26385 0.52 +0.7

Or see this region's nucleotide sequence