Strain Fitness in Escherichia coli ECOR38 around HEPCGN_24590

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_24575 and HEPCGN_24580 are separated by 27 nucleotidesHEPCGN_24580 and HEPCGN_24585 are separated by 97 nucleotidesHEPCGN_24585 and HEPCGN_24590 overlap by 4 nucleotidesHEPCGN_24590 and HEPCGN_24595 are separated by 9 nucleotidesHEPCGN_24595 and HEPCGN_24600 are separated by 14 nucleotidesHEPCGN_24600 and HEPCGN_24605 overlap by 4 nucleotides HEPCGN_24575: HEPCGN_24575 - hypothetical protein, at 3,674,785 to 3,675,054 _24575 HEPCGN_24580: HEPCGN_24580 - host-nuclease inhibitor protein Gam, at 3,675,082 to 3,675,612 _24580 HEPCGN_24585: HEPCGN_24585 - hypothetical protein, at 3,675,710 to 3,675,904 _24585 HEPCGN_24590: HEPCGN_24590 - hypothetical protein, at 3,675,901 to 3,676,173 _24590 HEPCGN_24595: HEPCGN_24595 - hypothetical protein, at 3,676,183 to 3,676,479 _24595 HEPCGN_24600: HEPCGN_24600 - hypothetical protein, at 3,676,494 to 3,676,709 _24600 HEPCGN_24605: HEPCGN_24605 - DUF2786 domain-containing protein, at 3,676,706 to 3,677,389 _24605 Position (kb) 3675 3676 3677Strain fitness (log2 ratio) -3 -2 -1 0 1at 3674.959 kb on + strand, within HEPCGN_24575at 3674.990 kb on - strand, within HEPCGN_24575at 3675.111 kb on + strandat 3675.112 kb on - strandat 3675.112 kb on - strandat 3675.501 kb on + strand, within HEPCGN_24580at 3675.501 kb on + strand, within HEPCGN_24580at 3675.745 kb on - strand, within HEPCGN_24585at 3675.952 kb on + strand, within HEPCGN_24590at 3676.598 kb on - strand, within HEPCGN_24600at 3676.636 kb on - strand, within HEPCGN_24600at 3676.636 kb on - strand, within HEPCGN_24600at 3676.849 kb on + strand, within HEPCGN_24605at 3676.914 kb on - strand, within HEPCGN_24605at 3676.914 kb on - strand, within HEPCGN_24605at 3677.001 kb on - strand, within HEPCGN_24605at 3677.033 kb on + strand, within HEPCGN_24605at 3677.082 kb on - strand, within HEPCGN_24605

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,674,959 + HEPCGN_24575 0.64 +0.2
3,674,990 - HEPCGN_24575 0.76 +0.7
3,675,111 + -3.0
3,675,112 - +0.3
3,675,112 - +0.3
3,675,501 + HEPCGN_24580 0.79 -0.7
3,675,501 + HEPCGN_24580 0.79 -0.2
3,675,745 - HEPCGN_24585 0.18 -0.8
3,675,952 + HEPCGN_24590 0.19 -0.8
3,676,598 - HEPCGN_24600 0.48 +0.1
3,676,636 - HEPCGN_24600 0.66 +1.0
3,676,636 - HEPCGN_24600 0.66 +0.5
3,676,849 + HEPCGN_24605 0.21 -2.3
3,676,914 - HEPCGN_24605 0.30 +0.6
3,676,914 - HEPCGN_24605 0.30 +0.4
3,677,001 - HEPCGN_24605 0.43 -1.1
3,677,033 + HEPCGN_24605 0.48 -0.0
3,677,082 - HEPCGN_24605 0.55 -0.0

Or see this region's nucleotide sequence