Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycfJ and comR are separated by 61 nucleotides comR and bhsA are separated by 240 nucleotides bhsA and ldtC are separated by 82 nucleotides
HEPCGN_23995: ycfJ - Uncharacterized protein YcfJ, at 3,585,628 to 3,586,167
ycfJ
HEPCGN_24000: comR - TetR family copper-responsive transcriptional repressor ComR, at 3,586,229 to 3,586,861
comR
HEPCGN_24005: bhsA - multiple stress resistance protein BhsA, at 3,587,102 to 3,587,359
bhsA
HEPCGN_24010: ldtC - L,D-transpeptidase LdtC, at 3,587,442 to 3,588,401
ldtC
Position (kb) 3587
3588 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3586.132 kb on - strand at 3586.164 kb on - strand at 3586.231 kb on - strand at 3586.330 kb on + strand, within comR at 3586.334 kb on - strand, within comR at 3586.339 kb on + strand, within comR at 3586.340 kb on - strand, within comR at 3586.642 kb on - strand, within comR at 3586.665 kb on - strand, within comR at 3586.693 kb on - strand, within comR at 3586.695 kb on - strand, within comR at 3586.695 kb on - strand, within comR at 3586.872 kb on + strand at 3586.873 kb on - strand at 3586.900 kb on + strand at 3586.902 kb on + strand at 3586.909 kb on - strand at 3587.036 kb on + strand at 3587.112 kb on + strand at 3587.215 kb on + strand, within bhsA at 3587.305 kb on + strand, within bhsA at 3587.347 kb on - strand at 3587.347 kb on - strand at 3587.357 kb on + strand at 3587.357 kb on + strand at 3587.358 kb on - strand at 3587.374 kb on + strand at 3587.577 kb on - strand, within ldtC at 3587.577 kb on - strand, within ldtC at 3587.577 kb on - strand, within ldtC at 3587.577 kb on - strand, within ldtC at 3587.628 kb on + strand, within ldtC at 3587.629 kb on - strand, within ldtC at 3587.691 kb on + strand, within ldtC at 3587.692 kb on - strand, within ldtC at 3587.812 kb on + strand, within ldtC at 3587.910 kb on - strand, within ldtC at 3588.062 kb on - strand, within ldtC at 3588.062 kb on - strand, within ldtC at 3588.083 kb on + strand, within ldtC at 3588.083 kb on + strand, within ldtC at 3588.084 kb on - strand, within ldtC at 3588.166 kb on + strand, within ldtC at 3588.215 kb on + strand, within ldtC at 3588.265 kb on + strand, within ldtC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,586,132 - +1.0 3,586,164 - -0.2 3,586,231 - +0.9 3,586,330 + comR HEPCGN_24000 0.16 -1.4 3,586,334 - comR HEPCGN_24000 0.17 -0.0 3,586,339 + comR HEPCGN_24000 0.17 +0.2 3,586,340 - comR HEPCGN_24000 0.18 -0.1 3,586,642 - comR HEPCGN_24000 0.65 +0.6 3,586,665 - comR HEPCGN_24000 0.69 +0.5 3,586,693 - comR HEPCGN_24000 0.73 -1.5 3,586,695 - comR HEPCGN_24000 0.74 -0.8 3,586,695 - comR HEPCGN_24000 0.74 +1.0 3,586,872 + +0.7 3,586,873 - +2.2 3,586,900 + -0.1 3,586,902 + +1.5 3,586,909 - +0.3 3,587,036 + +1.5 3,587,112 + +0.3 3,587,215 + bhsA HEPCGN_24005 0.44 -0.8 3,587,305 + bhsA HEPCGN_24005 0.79 -0.3 3,587,347 - +0.5 3,587,347 - +2.8 3,587,357 + -1.1 3,587,357 + +0.2 3,587,358 - -0.3 3,587,374 + +1.1 3,587,577 - ldtC HEPCGN_24010 0.14 +1.5 3,587,577 - ldtC HEPCGN_24010 0.14 -0.1 3,587,577 - ldtC HEPCGN_24010 0.14 +0.6 3,587,577 - ldtC HEPCGN_24010 0.14 +1.3 3,587,628 + ldtC HEPCGN_24010 0.19 +0.9 3,587,629 - ldtC HEPCGN_24010 0.19 -0.7 3,587,691 + ldtC HEPCGN_24010 0.26 -0.2 3,587,692 - ldtC HEPCGN_24010 0.26 -1.4 3,587,812 + ldtC HEPCGN_24010 0.39 +1.5 3,587,910 - ldtC HEPCGN_24010 0.49 -0.2 3,588,062 - ldtC HEPCGN_24010 0.65 -1.0 3,588,062 - ldtC HEPCGN_24010 0.65 -0.6 3,588,083 + ldtC HEPCGN_24010 0.67 -0.5 3,588,083 + ldtC HEPCGN_24010 0.67 -0.2 3,588,084 - ldtC HEPCGN_24010 0.67 -0.3 3,588,166 + ldtC HEPCGN_24010 0.75 +0.8 3,588,215 + ldtC HEPCGN_24010 0.81 -0.3 3,588,265 + ldtC HEPCGN_24010 0.86 -1.8
Or see this region's nucleotide sequence