Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23985

Experiment: Bas61

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas61
3,582,213	-	nagZ	HEPCGN_23980	0.10	+0.0
3,582,213	-	nagZ	HEPCGN_23980	0.10	+0.8
3,582,232	-	nagZ	HEPCGN_23980	0.12	-1.3
3,582,436	+	nagZ	HEPCGN_23980	0.32	+1.3
3,582,436	+	nagZ	HEPCGN_23980	0.32	-1.7
3,582,563	-	nagZ	HEPCGN_23980	0.44	-0.8
3,582,563	-	nagZ	HEPCGN_23980	0.44	-1.0
3,582,563	-	nagZ	HEPCGN_23980	0.44	-0.1
3,582,563	-	nagZ	HEPCGN_23980	0.44	+1.5
3,582,563	-	nagZ	HEPCGN_23980	0.44	+0.1
3,582,685	+	nagZ	HEPCGN_23980	0.56	+0.4
3,582,685	+	nagZ	HEPCGN_23980	0.56	+0.9
3,582,685	+	nagZ	HEPCGN_23980	0.56	+0.1
3,582,752	+	nagZ	HEPCGN_23980	0.63	-1.0
3,582,752	+	nagZ	HEPCGN_23980	0.63	-0.3
3,582,753	-	nagZ	HEPCGN_23980	0.63	+0.1
3,582,888	-	nagZ	HEPCGN_23980	0.76	+0.1
3,582,953	-	nagZ	HEPCGN_23980	0.82	+0.0
3,583,021	+	nagZ	HEPCGN_23980	0.89	-1.6
3,583,021	+	nagZ	HEPCGN_23980	0.89	-0.9
3,583,160	+				-0.1
3,583,161	-				+0.1
3,583,164	+				-1.0
3,583,165	-				-0.8
3,583,240	+	ycfP	HEPCGN_23985	0.16	-0.7
3,583,254	+	ycfP	HEPCGN_23985	0.18	-0.1
3,583,281	-	ycfP	HEPCGN_23985	0.23	-0.8
3,583,476	+	ycfP	HEPCGN_23985	0.59	-3.2
3,583,476	+	ycfP	HEPCGN_23985	0.59	-1.6
3,583,602	+	ycfP	HEPCGN_23985	0.82	+1.1
3,583,839	+				+0.9
3,583,839	+				+0.2
3,583,854	-				-0.6
3,583,854	-				-2.6
3,583,968	-				+0.4
3,584,054	-				+0.5
3,584,084	+				+0.9
3,584,175	-				+0.6
3,584,298	+	ndh	HEPCGN_23990	0.15	+0.2
3,584,465	+	ndh	HEPCGN_23990	0.28	-1.2
3,584,608	+	ndh	HEPCGN_23990	0.39	-0.4
3,584,608	+	ndh	HEPCGN_23990	0.39	-0.1
3,584,609	-	ndh	HEPCGN_23990	0.39	-2.4
3,584,691	+	ndh	HEPCGN_23990	0.46	+0.2
3,584,692	-	ndh	HEPCGN_23990	0.46	-0.4