Strain Fitness in Escherichia coli ECOR38 around HEPCGN_17890

Experiment: Bas61

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas61
2,322,238	+	hybC	HEPCGN_17880	0.77	+0.4
2,322,342	+	hybC	HEPCGN_17880	0.83	-0.5
2,322,388	+	hybC	HEPCGN_17880	0.86	-0.3
2,322,391	+	hybC	HEPCGN_17880	0.86	-0.2
2,322,580	-				-0.6
2,322,630	-				-1.5
2,322,630	-				+2.7
2,322,641	+				-0.4
2,322,718	+	hybD	HEPCGN_17885	0.18	-0.6
2,322,719	-	hybD	HEPCGN_17885	0.18	-0.8
2,322,734	-	hybD	HEPCGN_17885	0.21	+0.9
2,322,888	+	hybD	HEPCGN_17885	0.52	-0.1
2,322,929	+	hybD	HEPCGN_17885	0.60	-0.1
2,322,930	-	hybD	HEPCGN_17885	0.60	+0.1
2,323,098	+				+0.1
2,323,239	-	hybE	HEPCGN_17890	0.25	-0.2
2,323,239	-	hybE	HEPCGN_17890	0.25	-0.1
2,323,382	+	hybE	HEPCGN_17890	0.54	+0.1
2,323,390	+	hybE	HEPCGN_17890	0.56	+1.0
2,323,399	+	hybE	HEPCGN_17890	0.57	+0.0
2,323,431	-	hybE	HEPCGN_17890	0.64	-1.2
2,323,431	-	hybE	HEPCGN_17890	0.64	-0.9
2,323,466	-	hybE	HEPCGN_17890	0.71	-1.1
2,323,784	-	hypA	HEPCGN_17895	0.54	-0.2
2,323,787	+	hypA	HEPCGN_17895	0.55	+0.1
2,323,787	+	hypA	HEPCGN_17895	0.55	+0.8
2,323,788	-	hypA	HEPCGN_17895	0.55	+0.4
2,323,788	-	hypA	HEPCGN_17895	0.55	+0.1
2,323,925	+				-0.3
2,323,949	-				-0.7
2,323,959	-				-0.6
2,323,997	+	hybG	HEPCGN_17900	0.18	+0.7
2,324,023	+	hybG	HEPCGN_17900	0.28	+0.3
2,324,023	+	hybG	HEPCGN_17900	0.28	-0.1
2,324,024	-	hybG	HEPCGN_17900	0.29	+0.5
2,324,024	-	hybG	HEPCGN_17900	0.29	+2.1
2,324,024	-	hybG	HEPCGN_17900	0.29	+1.0
2,324,024	-	hybG	HEPCGN_17900	0.29	-0.3
2,324,030	+	hybG	HEPCGN_17900	0.31	+0.4
2,324,069	+	hybG	HEPCGN_17900	0.47	-0.1
2,324,069	+	hybG	HEPCGN_17900	0.47	+0.2
2,324,070	-	hybG	HEPCGN_17900	0.47	+0.5
2,324,104	+	hybG	HEPCGN_17900	0.61	-0.1
2,324,159	-	hybG	HEPCGN_17900	0.83	+0.3
2,324,182	-				-0.2
2,324,206	+				+0.5
2,324,244	+				+2.2
2,324,273	-				-0.3
2,324,285	+				-0.7
2,324,286	-				+0.6
2,324,364	-	yghU	HEPCGN_17905	0.11	-0.0
2,324,429	+	yghU	HEPCGN_17905	0.18	+0.5
2,324,429	+	yghU	HEPCGN_17905	0.18	-1.2
2,324,430	-	yghU	HEPCGN_17905	0.18	-0.2
2,324,430	-	yghU	HEPCGN_17905	0.18	+0.5
2,324,430	-	yghU	HEPCGN_17905	0.18	+1.1
2,324,431	+	yghU	HEPCGN_17905	0.18	-0.0
2,324,432	-	yghU	HEPCGN_17905	0.19	+0.1
2,324,464	+	yghU	HEPCGN_17905	0.22	+0.2
2,324,465	-	yghU	HEPCGN_17905	0.22	-0.9
2,324,601	-	yghU	HEPCGN_17905	0.38	+0.6