Strain Fitness in Escherichia coli ECOR38 around HEPCGN_14320

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_14310 and ptsN are separated by 26 nucleotidesptsN and frwB are separated by 17 nucleotidesfrwB and frwC are separated by 24 nucleotides HEPCGN_14310: HEPCGN_14310 - Transcriptional antiterminator, BglG, at 1,617,752 to 1,619,305 _14310 HEPCGN_14315: ptsN - PTS fructose transporter subunit IIA, at 1,619,332 to 1,619,802 ptsN HEPCGN_14320: frwB - PTS fructose transporter subunit IIB, at 1,619,820 to 1,620,134 frwB HEPCGN_14325: frwC - PTS fructose transporter subunit IIC, at 1,620,159 to 1,621,250 frwC Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -1 0 1 2at 1618.921 kb on + strand, within HEPCGN_14310at 1618.965 kb on - strand, within HEPCGN_14310at 1619.022 kb on + strand, within HEPCGN_14310at 1619.023 kb on - strand, within HEPCGN_14310at 1619.023 kb on - strand, within HEPCGN_14310at 1619.058 kb on + strand, within HEPCGN_14310at 1619.191 kb on + strandat 1619.554 kb on - strand, within ptsNat 1619.628 kb on + strand, within ptsNat 1619.724 kb on - strand, within ptsNat 1619.724 kb on - strand, within ptsNat 1619.868 kb on + strand, within frwBat 1620.050 kb on + strand, within frwBat 1620.229 kb on + strandat 1620.257 kb on + strandat 1620.257 kb on + strandat 1620.258 kb on - strandat 1620.387 kb on + strand, within frwCat 1620.393 kb on - strand, within frwCat 1620.474 kb on - strand, within frwCat 1620.580 kb on + strand, within frwCat 1620.580 kb on + strand, within frwCat 1620.581 kb on - strand, within frwCat 1620.640 kb on + strand, within frwCat 1620.641 kb on - strand, within frwCat 1620.706 kb on + strand, within frwCat 1620.795 kb on + strand, within frwCat 1620.863 kb on - strand, within frwCat 1620.875 kb on + strand, within frwCat 1620.875 kb on + strand, within frwCat 1620.879 kb on + strand, within frwCat 1620.880 kb on - strand, within frwCat 1621.121 kb on + strand, within frwCat 1621.124 kb on - strand, within frwCat 1621.124 kb on - strand, within frwC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,618,921 + HEPCGN_14310 0.75 +1.8
1,618,965 - HEPCGN_14310 0.78 +0.5
1,619,022 + HEPCGN_14310 0.82 +0.7
1,619,023 - HEPCGN_14310 0.82 -1.1
1,619,023 - HEPCGN_14310 0.82 +0.8
1,619,058 + HEPCGN_14310 0.84 -0.2
1,619,191 + -0.7
1,619,554 - ptsN HEPCGN_14315 0.47 +0.3
1,619,628 + ptsN HEPCGN_14315 0.63 +0.6
1,619,724 - ptsN HEPCGN_14315 0.83 +1.3
1,619,724 - ptsN HEPCGN_14315 0.83 -1.3
1,619,868 + frwB HEPCGN_14320 0.15 -0.9
1,620,050 + frwB HEPCGN_14320 0.73 -1.5
1,620,229 + +0.3
1,620,257 + +0.3
1,620,257 + -0.0
1,620,258 - -0.7
1,620,387 + frwC HEPCGN_14325 0.21 -1.2
1,620,393 - frwC HEPCGN_14325 0.21 +0.5
1,620,474 - frwC HEPCGN_14325 0.29 +0.3
1,620,580 + frwC HEPCGN_14325 0.39 -0.7
1,620,580 + frwC HEPCGN_14325 0.39 -0.1
1,620,581 - frwC HEPCGN_14325 0.39 +0.6
1,620,640 + frwC HEPCGN_14325 0.44 -0.6
1,620,641 - frwC HEPCGN_14325 0.44 +1.1
1,620,706 + frwC HEPCGN_14325 0.50 -0.2
1,620,795 + frwC HEPCGN_14325 0.58 +2.2
1,620,863 - frwC HEPCGN_14325 0.64 -0.1
1,620,875 + frwC HEPCGN_14325 0.66 -0.7
1,620,875 + frwC HEPCGN_14325 0.66 -0.0
1,620,879 + frwC HEPCGN_14325 0.66 +1.9
1,620,880 - frwC HEPCGN_14325 0.66 -0.1
1,621,121 + frwC HEPCGN_14325 0.88 -0.0
1,621,124 - frwC HEPCGN_14325 0.88 +0.1
1,621,124 - frwC HEPCGN_14325 0.88 +0.3

Or see this region's nucleotide sequence