Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_14310 and ptsN are separated by 26 nucleotides ptsN and frwB are separated by 17 nucleotides frwB and frwC are separated by 24 nucleotides
HEPCGN_14310: HEPCGN_14310 - Transcriptional antiterminator, BglG, at 1,617,752 to 1,619,305
_14310
HEPCGN_14315: ptsN - PTS fructose transporter subunit IIA, at 1,619,332 to 1,619,802
ptsN
HEPCGN_14320: frwB - PTS fructose transporter subunit IIB, at 1,619,820 to 1,620,134
frwB
HEPCGN_14325: frwC - PTS fructose transporter subunit IIC, at 1,620,159 to 1,621,250
frwC
Position (kb)
1619
1620
1621 Strain fitness (log2 ratio)
-1
0
1
2 at 1618.921 kb on + strand, within HEPCGN_14310 at 1618.965 kb on - strand, within HEPCGN_14310 at 1619.022 kb on + strand, within HEPCGN_14310 at 1619.023 kb on - strand, within HEPCGN_14310 at 1619.023 kb on - strand, within HEPCGN_14310 at 1619.058 kb on + strand, within HEPCGN_14310 at 1619.191 kb on + strand at 1619.554 kb on - strand, within ptsN at 1619.628 kb on + strand, within ptsN at 1619.724 kb on - strand, within ptsN at 1619.724 kb on - strand, within ptsN at 1619.868 kb on + strand, within frwB at 1620.050 kb on + strand, within frwB at 1620.229 kb on + strand at 1620.257 kb on + strand at 1620.257 kb on + strand at 1620.258 kb on - strand at 1620.387 kb on + strand, within frwC at 1620.393 kb on - strand, within frwC at 1620.474 kb on - strand, within frwC at 1620.580 kb on + strand, within frwC at 1620.580 kb on + strand, within frwC at 1620.581 kb on - strand, within frwC at 1620.640 kb on + strand, within frwC at 1620.641 kb on - strand, within frwC at 1620.706 kb on + strand, within frwC at 1620.795 kb on + strand, within frwC at 1620.863 kb on - strand, within frwC at 1620.875 kb on + strand, within frwC at 1620.875 kb on + strand, within frwC at 1620.879 kb on + strand, within frwC at 1620.880 kb on - strand, within frwC at 1621.121 kb on + strand, within frwC at 1621.124 kb on - strand, within frwC at 1621.124 kb on - strand, within frwC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,618,921 + HEPCGN_14310 0.75 +1.8 1,618,965 - HEPCGN_14310 0.78 +0.5 1,619,022 + HEPCGN_14310 0.82 +0.7 1,619,023 - HEPCGN_14310 0.82 -1.1 1,619,023 - HEPCGN_14310 0.82 +0.8 1,619,058 + HEPCGN_14310 0.84 -0.2 1,619,191 + -0.7 1,619,554 - ptsN HEPCGN_14315 0.47 +0.3 1,619,628 + ptsN HEPCGN_14315 0.63 +0.6 1,619,724 - ptsN HEPCGN_14315 0.83 +1.3 1,619,724 - ptsN HEPCGN_14315 0.83 -1.3 1,619,868 + frwB HEPCGN_14320 0.15 -0.9 1,620,050 + frwB HEPCGN_14320 0.73 -1.5 1,620,229 + +0.3 1,620,257 + +0.3 1,620,257 + -0.0 1,620,258 - -0.7 1,620,387 + frwC HEPCGN_14325 0.21 -1.2 1,620,393 - frwC HEPCGN_14325 0.21 +0.5 1,620,474 - frwC HEPCGN_14325 0.29 +0.3 1,620,580 + frwC HEPCGN_14325 0.39 -0.7 1,620,580 + frwC HEPCGN_14325 0.39 -0.1 1,620,581 - frwC HEPCGN_14325 0.39 +0.6 1,620,640 + frwC HEPCGN_14325 0.44 -0.6 1,620,641 - frwC HEPCGN_14325 0.44 +1.1 1,620,706 + frwC HEPCGN_14325 0.50 -0.2 1,620,795 + frwC HEPCGN_14325 0.58 +2.2 1,620,863 - frwC HEPCGN_14325 0.64 -0.1 1,620,875 + frwC HEPCGN_14325 0.66 -0.7 1,620,875 + frwC HEPCGN_14325 0.66 -0.0 1,620,879 + frwC HEPCGN_14325 0.66 +1.9 1,620,880 - frwC HEPCGN_14325 0.66 -0.1 1,621,121 + frwC HEPCGN_14325 0.88 -0.0 1,621,124 - frwC HEPCGN_14325 0.88 +0.1 1,621,124 - frwC HEPCGN_14325 0.88 +0.3
Or see this region's nucleotide sequence