Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12790

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpolA and HEPCGN_12790 are separated by 1 nucleotidesHEPCGN_12790 and yihG are separated by 119 nucleotides HEPCGN_12785: polA - DNA polymerase I, at 1,305,958 to 1,308,744 polA HEPCGN_12790: HEPCGN_12790 - hypothetical protein, at 1,308,746 to 1,308,988 _12790 HEPCGN_12795: yihG - putative acyltransferase YihG, at 1,309,108 to 1,310,040 yihG Position (kb) 1308 1309Strain fitness (log2 ratio) -2 -1 0 1at 1308.915 kb on - strand, within HEPCGN_12790at 1309.095 kb on + strandat 1309.096 kb on - strandat 1309.107 kb on + strandat 1309.247 kb on + strand, within yihGat 1309.248 kb on - strand, within yihGat 1309.293 kb on + strand, within yihGat 1309.300 kb on + strand, within yihGat 1309.300 kb on + strand, within yihGat 1309.301 kb on - strand, within yihGat 1309.326 kb on - strand, within yihGat 1309.329 kb on - strand, within yihGat 1309.380 kb on - strand, within yihGat 1309.384 kb on - strand, within yihGat 1309.397 kb on - strand, within yihGat 1309.404 kb on + strand, within yihGat 1309.404 kb on + strand, within yihGat 1309.411 kb on - strand, within yihGat 1309.411 kb on - strand, within yihGat 1309.419 kb on + strand, within yihGat 1309.420 kb on - strand, within yihGat 1309.431 kb on + strand, within yihGat 1309.431 kb on + strand, within yihGat 1309.432 kb on - strand, within yihGat 1309.432 kb on - strand, within yihGat 1309.477 kb on - strand, within yihGat 1309.562 kb on - strand, within yihGat 1309.574 kb on - strand, within yihGat 1309.578 kb on - strand, within yihGat 1309.578 kb on - strand, within yihGat 1309.578 kb on - strand, within yihGat 1309.580 kb on + strand, within yihGat 1309.580 kb on + strand, within yihGat 1309.769 kb on + strand, within yihGat 1309.770 kb on - strand, within yihGat 1309.770 kb on - strand, within yihGat 1309.776 kb on - strand, within yihGat 1309.831 kb on - strand, within yihGat 1309.856 kb on + strand, within yihGat 1309.857 kb on - strand, within yihGat 1309.883 kb on + strand, within yihGat 1309.896 kb on - strand, within yihGat 1309.902 kb on + strand, within yihGat 1309.916 kb on + strand, within yihGat 1309.917 kb on - strand, within yihGat 1309.917 kb on - strand, within yihGat 1309.917 kb on - strand, within yihGat 1309.927 kb on + strand, within yihG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,308,915 - HEPCGN_12790 0.70 -0.9
1,309,095 + -0.4
1,309,096 - +0.0
1,309,107 + +1.2
1,309,247 + yihG HEPCGN_12795 0.15 +0.1
1,309,248 - yihG HEPCGN_12795 0.15 -0.2
1,309,293 + yihG HEPCGN_12795 0.20 +0.8
1,309,300 + yihG HEPCGN_12795 0.21 +0.1
1,309,300 + yihG HEPCGN_12795 0.21 -0.4
1,309,301 - yihG HEPCGN_12795 0.21 +0.4
1,309,326 - yihG HEPCGN_12795 0.23 +0.5
1,309,329 - yihG HEPCGN_12795 0.24 -2.4
1,309,380 - yihG HEPCGN_12795 0.29 +0.6
1,309,384 - yihG HEPCGN_12795 0.30 +0.4
1,309,397 - yihG HEPCGN_12795 0.31 -0.7
1,309,404 + yihG HEPCGN_12795 0.32 +0.3
1,309,404 + yihG HEPCGN_12795 0.32 +0.8
1,309,411 - yihG HEPCGN_12795 0.32 +0.2
1,309,411 - yihG HEPCGN_12795 0.32 +0.1
1,309,419 + yihG HEPCGN_12795 0.33 +0.1
1,309,420 - yihG HEPCGN_12795 0.33 -0.7
1,309,431 + yihG HEPCGN_12795 0.35 -0.5
1,309,431 + yihG HEPCGN_12795 0.35 -2.7
1,309,432 - yihG HEPCGN_12795 0.35 -0.3
1,309,432 - yihG HEPCGN_12795 0.35 -1.1
1,309,477 - yihG HEPCGN_12795 0.40 -1.2
1,309,562 - yihG HEPCGN_12795 0.49 +0.4
1,309,574 - yihG HEPCGN_12795 0.50 -1.2
1,309,578 - yihG HEPCGN_12795 0.50 -2.3
1,309,578 - yihG HEPCGN_12795 0.50 +0.2
1,309,578 - yihG HEPCGN_12795 0.50 -1.0
1,309,580 + yihG HEPCGN_12795 0.51 +0.6
1,309,580 + yihG HEPCGN_12795 0.51 -0.2
1,309,769 + yihG HEPCGN_12795 0.71 -0.1
1,309,770 - yihG HEPCGN_12795 0.71 +0.7
1,309,770 - yihG HEPCGN_12795 0.71 +0.3
1,309,776 - yihG HEPCGN_12795 0.72 +0.9
1,309,831 - yihG HEPCGN_12795 0.77 -0.6
1,309,856 + yihG HEPCGN_12795 0.80 -0.1
1,309,857 - yihG HEPCGN_12795 0.80 -0.3
1,309,883 + yihG HEPCGN_12795 0.83 +1.7
1,309,896 - yihG HEPCGN_12795 0.84 -0.2
1,309,902 + yihG HEPCGN_12795 0.85 -0.5
1,309,916 + yihG HEPCGN_12795 0.87 +0.1
1,309,917 - yihG HEPCGN_12795 0.87 -1.3
1,309,917 - yihG HEPCGN_12795 0.87 -0.5
1,309,917 - yihG HEPCGN_12795 0.87 -0.2
1,309,927 + yihG HEPCGN_12795 0.88 -0.7

Or see this region's nucleotide sequence