Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arsR and tetR(B overlap by 23 nucleotides tetR(B and tet(B are separated by 81 nucleotides tet(B and tetC are separated by 112 nucleotides tetC and araC are separated by 87 nucleotides
HEPCGN_10835: arsR - transcriptional regulator, at 909,396 to 910,019
arsR
HEPCGN_10840: tetR(B - tetracycline resistance transcriptional repressor TetR(B), at 909,997 to 910,620
tetR(B
HEPCGN_10845: tet(B - tetracycline efflux MFS transporter Tet(B), at 910,702 to 911,907
tet(B
HEPCGN_10850: tetC - tetracyline resistance-associated transcriptional repressor TetC, at 912,020 to 912,613
tetC
HEPCGN_10855: araC - AraC-type DNA-binding domain and AraC-containing proteins, at 912,701 to 913,117
araC
Position (kb) 910
911
912 Strain fitness (log2 ratio) -2
-1
0
1 at 910.135 kb on - strand, within tetR(B at 910.227 kb on - strand, within tetR(B at 910.504 kb on - strand, within tetR(B at 910.504 kb on - strand, within tetR(B at 910.520 kb on - strand, within tetR(B at 910.520 kb on - strand, within tetR(B at 910.520 kb on - strand, within tetR(B at 910.609 kb on + strand at 910.735 kb on - strand at 910.934 kb on + strand, within tet(B at 910.959 kb on - strand, within tet(B at 911.142 kb on + strand, within tet(B at 911.176 kb on - strand, within tet(B at 911.266 kb on - strand, within tet(B at 911.399 kb on + strand, within tet(B at 911.477 kb on + strand, within tet(B at 911.477 kb on + strand, within tet(B at 911.886 kb on + strand at 911.984 kb on + strand at 912.110 kb on + strand, within tetC at 912.223 kb on + strand, within tetC at 912.228 kb on + strand, within tetC at 912.419 kb on - strand, within tetC at 912.706 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 910,135 - tetR(B HEPCGN_10840 0.22 +0.4 910,227 - tetR(B HEPCGN_10840 0.37 +0.8 910,504 - tetR(B HEPCGN_10840 0.81 -1.3 910,504 - tetR(B HEPCGN_10840 0.81 +0.8 910,520 - tetR(B HEPCGN_10840 0.84 -1.2 910,520 - tetR(B HEPCGN_10840 0.84 -0.8 910,520 - tetR(B HEPCGN_10840 0.84 -1.3 910,609 + +0.6 910,735 - -1.2 910,934 + tet(B HEPCGN_10845 0.19 -0.6 910,959 - tet(B HEPCGN_10845 0.21 -0.6 911,142 + tet(B HEPCGN_10845 0.36 -0.8 911,176 - tet(B HEPCGN_10845 0.39 -0.9 911,266 - tet(B HEPCGN_10845 0.47 -2.2 911,399 + tet(B HEPCGN_10845 0.58 -1.1 911,477 + tet(B HEPCGN_10845 0.64 -1.4 911,477 + tet(B HEPCGN_10845 0.64 -1.2 911,886 + +0.5 911,984 + -1.2 912,110 + tetC HEPCGN_10850 0.15 -0.4 912,223 + tetC HEPCGN_10850 0.34 -0.6 912,228 + tetC HEPCGN_10850 0.35 +0.5 912,419 - tetC HEPCGN_10850 0.67 +0.3 912,706 + +0.6
Or see this region's nucleotide sequence