Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09890 and HEPCGN_09895 are separated by 303 nucleotides HEPCGN_09895 and HEPCGN_09900 are separated by 220 nucleotides HEPCGN_09900 and ythA are separated by 52 nucleotides ythA and yjhC are separated by 42 nucleotides
HEPCGN_09890: HEPCGN_09890 - IS110 family transposase, at 723,267 to 724,010
_09890
HEPCGN_09895: HEPCGN_09895 - Transposase, at 724,314 to 724,490
_09895
HEPCGN_09900: HEPCGN_09900 - YjhD, at 724,711 to 725,061
_09900
HEPCGN_09905: ythA - Uncharacterized protein YthA, at 725,114 to 725,239
ythA
HEPCGN_09910: yjhC - Uncharacterized oxidoreductase YjhC, at 725,282 to 726,400
yjhC
Position (kb) 724
725 Strain fitness (log2 ratio) -1
0
1
2 at 723.394 kb on - strand, within HEPCGN_09890 at 723.410 kb on + strand, within HEPCGN_09890 at 723.411 kb on - strand, within HEPCGN_09890 at 723.411 kb on - strand, within HEPCGN_09890 at 723.438 kb on + strand, within HEPCGN_09890 at 723.467 kb on + strand, within HEPCGN_09890 at 723.467 kb on + strand, within HEPCGN_09890 at 723.557 kb on + strand, within HEPCGN_09890 at 723.557 kb on + strand, within HEPCGN_09890 at 723.558 kb on - strand, within HEPCGN_09890 at 723.611 kb on - strand, within HEPCGN_09890 at 723.611 kb on - strand, within HEPCGN_09890 at 723.636 kb on + strand, within HEPCGN_09890 at 723.637 kb on - strand, within HEPCGN_09890 at 723.758 kb on + strand, within HEPCGN_09890 at 723.759 kb on - strand, within HEPCGN_09890 at 723.759 kb on - strand, within HEPCGN_09890 at 723.833 kb on + strand, within HEPCGN_09890 at 723.833 kb on + strand, within HEPCGN_09890 at 723.834 kb on - strand, within HEPCGN_09890 at 723.834 kb on - strand, within HEPCGN_09890 at 723.836 kb on + strand, within HEPCGN_09890 at 723.836 kb on + strand, within HEPCGN_09890 at 723.836 kb on + strand, within HEPCGN_09890 at 723.956 kb on + strand at 724.012 kb on + strand at 724.012 kb on + strand at 724.086 kb on + strand at 724.087 kb on - strand at 724.170 kb on + strand at 724.175 kb on + strand at 724.176 kb on - strand at 724.176 kb on - strand at 724.176 kb on - strand at 724.292 kb on - strand at 724.313 kb on - strand at 724.404 kb on - strand, within HEPCGN_09895 at 724.510 kb on + strand at 724.522 kb on - strand at 724.619 kb on + strand at 724.625 kb on + strand at 724.649 kb on - strand at 724.710 kb on - strand at 724.763 kb on - strand, within HEPCGN_09900 at 724.772 kb on + strand, within HEPCGN_09900 at 724.905 kb on + strand, within HEPCGN_09900 at 724.992 kb on + strand, within HEPCGN_09900 at 725.007 kb on - strand, within HEPCGN_09900 at 725.056 kb on - strand at 725.066 kb on + strand at 725.087 kb on + strand at 725.087 kb on + strand at 725.091 kb on + strand at 725.288 kb on + strand at 725.296 kb on + strand at 725.296 kb on + strand at 725.408 kb on - strand, within yjhC at 725.409 kb on + strand, within yjhC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 723,394 - HEPCGN_09890 0.17 +0.1 723,410 + HEPCGN_09890 0.19 +2.3 723,411 - HEPCGN_09890 0.19 +0.6 723,411 - HEPCGN_09890 0.19 -0.1 723,438 + HEPCGN_09890 0.23 -0.6 723,467 + HEPCGN_09890 0.27 -0.1 723,467 + HEPCGN_09890 0.27 -0.9 723,557 + HEPCGN_09890 0.39 -0.4 723,557 + HEPCGN_09890 0.39 -0.6 723,558 - HEPCGN_09890 0.39 +0.7 723,611 - HEPCGN_09890 0.46 -0.0 723,611 - HEPCGN_09890 0.46 -0.4 723,636 + HEPCGN_09890 0.50 -1.2 723,637 - HEPCGN_09890 0.50 +0.0 723,758 + HEPCGN_09890 0.66 +0.5 723,759 - HEPCGN_09890 0.66 -0.1 723,759 - HEPCGN_09890 0.66 -0.0 723,833 + HEPCGN_09890 0.76 +0.0 723,833 + HEPCGN_09890 0.76 +1.6 723,834 - HEPCGN_09890 0.76 +1.0 723,834 - HEPCGN_09890 0.76 -0.6 723,836 + HEPCGN_09890 0.76 +1.4 723,836 + HEPCGN_09890 0.76 +0.0 723,836 + HEPCGN_09890 0.76 -0.4 723,956 + +0.9 724,012 + -0.4 724,012 + +0.4 724,086 + +1.2 724,087 - -0.2 724,170 + -1.0 724,175 + +0.4 724,176 - -0.2 724,176 - +0.9 724,176 - -0.1 724,292 - -1.7 724,313 - -0.7 724,404 - HEPCGN_09895 0.51 -1.3 724,510 + +1.3 724,522 - +0.2 724,619 + +0.7 724,625 + +0.2 724,649 - -1.7 724,710 - +0.0 724,763 - HEPCGN_09900 0.15 -0.7 724,772 + HEPCGN_09900 0.17 -0.9 724,905 + HEPCGN_09900 0.55 -0.1 724,992 + HEPCGN_09900 0.80 +1.7 725,007 - HEPCGN_09900 0.84 +0.6 725,056 - +1.1 725,066 + -0.0 725,087 + +0.7 725,087 + +0.1 725,091 + +0.6 725,288 + +0.0 725,296 + +0.5 725,296 + -0.1 725,408 - yjhC HEPCGN_09910 0.11 -0.5 725,409 + yjhC HEPCGN_09910 0.11 -0.6
Or see this region's nucleotide sequence